Wall clock time and date at job start Mon Mar 30 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39686 * 120.20006 * 0.99764 * 3 2 1 5 5 C 1.37819 * 119.94290 * 179.71588 * 4 3 2 6 6 C 1.38739 * 120.33690 * 0.56891 * 5 4 3 7 7 Cl 1.73602 * 119.79946 * 179.74112 * 6 5 4 8 8 C 1.38143 * 120.39844 * 359.70773 * 6 5 4 9 9 C 1.38907 * 120.05056 * 0.02562 * 8 6 5 10 10 N 1.38982 * 120.17258 * 179.97438 * 9 8 6 11 11 C 1.34777 * 119.99728 * 24.87726 * 10 9 8 12 12 O 1.21739 * 119.99977 * 5.52305 * 11 10 9 13 13 C 1.46143 * 119.99529 * 185.52693 * 11 10 9 14 14 H 1.07994 * 120.00521 * 5.01533 * 13 11 10 15 15 C 1.40138 * 119.99502 * 185.01264 * 13 11 10 16 16 N 1.30634 * 120.00250 * 354.98476 * 15 13 11 17 17 Si 1.86806 * 119.99731 * 174.98227 * 15 13 11 18 18 H 1.48491 * 109.47164 * 95.00468 * 17 15 13 19 19 H 1.48498 * 109.46719 * 215.00428 * 17 15 13 20 20 H 1.48499 * 109.47163 * 334.99908 * 17 15 13 21 21 H 1.08007 * 120.02866 * 0.02562 * 4 3 2 22 22 H 1.07998 * 119.82949 * 180.26119 * 5 4 3 23 23 H 1.07995 * 119.97313 * 180.02562 * 8 6 5 24 24 H 0.97006 * 120.00145 * 204.87767 * 10 9 8 25 25 H 0.96998 * 119.99486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 -1.2061 -0.0210 5 6 4.6493 -1.1992 -0.0268 6 6 5.3442 0.0013 0.0000 7 17 7.0802 -0.0064 -0.0009 8 6 4.6630 1.2028 0.0267 9 6 3.2739 1.2150 0.0274 10 7 2.5860 2.4223 0.0548 11 6 3.1725 3.5428 -0.4113 12 8 4.2636 3.4807 -0.9477 13 6 2.4985 4.8321 -0.2726 14 1 1.5696 4.8999 0.2741 15 6 3.0577 5.9805 -0.8491 16 7 4.2283 5.9182 -1.4255 17 14 2.1290 7.6004 -0.7933 18 1 2.5881 8.3942 0.3746 19 1 2.3870 8.3620 -2.0418 20 1 0.6737 7.3326 -0.6687 21 1 2.7353 -2.1437 -0.0378 22 1 5.1911 -2.1333 -0.0474 23 1 5.2108 2.1333 0.0471 24 1 1.6838 2.4586 0.4094 25 1 4.6151 6.7131 -1.8248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083350186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:23 Heat of formation + Delta-G solvation = -12.321650 kcal Electronic energy + Delta-G solvation = -14969.762391 eV Core-core repulsion = 12166.302045 eV Total energy + Delta-G solvation = -2803.460346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27720 -39.08169 -37.82574 -37.09504 -35.44662 -34.61730 -32.06542 -30.96378 -28.37881 -24.79867 -24.28943 -21.84612 -20.23014 -19.30219 -18.21047 -17.68507 -16.60235 -16.31315 -15.94004 -15.39965 -15.07234 -14.76921 -14.55290 -14.28795 -14.04818 -13.94978 -13.28990 -13.00857 -12.90871 -12.82177 -12.68710 -12.38886 -12.06802 -11.91712 -11.25196 -10.94482 -10.04217 -9.71891 -8.96812 -8.44200 -7.02235 -0.35321 0.36591 1.11029 1.37657 1.39097 1.54893 1.55619 1.83547 2.15982 2.29339 2.63607 2.79393 2.89465 3.46458 3.85048 4.20254 4.31140 4.32617 4.77163 5.01808 5.16868 5.20082 5.36091 5.54030 5.63411 6.01547 6.06397 6.41043 6.71193 7.07579 8.18732 8.47697 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.007118 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.113263 B = 3932.855416 C = 5170.957273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.281 3.719 3 C -0.099 4.099 4 C -0.010 4.010 5 C -0.143 4.143 6 C 0.018 3.982 7 Cl -0.063 7.063 8 C -0.163 4.163 9 C 0.230 3.770 10 N -0.685 5.685 11 C 0.527 3.473 12 O -0.588 6.588 13 C -0.563 4.563 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.802 5.802 17 Si 0.996 3.004 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.252 1.252 21 H 0.183 0.817 22 H 0.177 0.823 23 H 0.131 0.869 24 H 0.405 0.595 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -11.224 3.657 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.033 4.033 3 C -0.107 4.107 4 C -0.031 4.031 5 C -0.163 4.163 6 C -0.011 4.011 7 Cl -0.034 7.034 8 C -0.185 4.185 9 C 0.126 3.874 10 N -0.325 5.325 11 C 0.335 3.665 12 O -0.473 6.473 13 C -0.598 4.598 14 H 0.107 0.893 15 C -0.182 4.182 16 N -0.430 5.430 17 Si 0.816 3.184 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.176 1.176 21 H 0.200 0.800 22 H 0.195 0.805 23 H 0.148 0.852 24 H 0.240 0.760 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.101 -11.037 3.184 11.488 hybrid contribution 0.014 1.145 0.046 1.147 sum 0.115 -9.892 3.230 10.406 Atomic orbital electron populations 1.81226 1.12542 1.08014 1.11351 1.25519 0.92380 0.93006 0.92399 1.15930 0.83997 0.93770 1.17020 1.21238 0.93093 0.96212 0.92563 1.21150 0.93563 0.96958 1.04582 1.21140 0.84950 0.94709 1.00277 1.98363 1.09605 1.98925 1.96529 1.21180 0.92815 0.98954 1.05585 1.17922 0.91236 0.85436 0.92852 1.43872 1.18690 1.06674 1.63266 1.18685 0.85622 0.83845 0.78314 1.90581 1.22852 1.86077 1.47779 1.21379 1.10189 0.91215 1.36998 0.89287 1.26894 0.94972 1.04420 0.91917 1.70091 1.15541 1.31526 1.25864 0.85006 0.79203 0.75384 0.78848 1.18433 1.19455 1.17583 0.79969 0.80523 0.85170 0.76009 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.30 18.54 19.00 0.35 -14.95 15 2 C 0.28 8.66 14.26 88.33 1.26 9.92 15 3 C -0.10 -2.92 5.76 -21.13 -0.12 -3.04 15 4 C -0.01 -0.22 9.75 22.52 0.22 0.00 15 5 C -0.14 -3.03 9.80 22.29 0.22 -2.81 15 6 C 0.02 0.52 6.32 22.37 0.14 0.67 15 7 Cl -0.06 -1.78 28.94 -2.72 -0.08 -1.86 15 8 C -0.16 -6.38 8.47 22.41 0.19 -6.19 15 9 C 0.23 8.74 6.43 38.72 0.25 8.99 15 10 N -0.68 -29.91 5.13 -306.94 -1.58 -31.49 15 11 C 0.53 28.58 7.53 86.29 0.65 29.23 15 12 O -0.59 -35.68 12.18 -4.47 -0.05 -35.73 15 13 C -0.56 -30.11 9.53 24.78 0.24 -29.88 15 14 H 0.09 4.32 7.85 -2.91 -0.02 4.29 15 15 C 0.04 1.88 5.50 85.33 0.47 2.35 15 16 N -0.80 -45.76 11.84 21.85 0.26 -45.50 15 17 Si 1.00 38.77 29.56 68.60 2.03 40.80 15 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 20 H -0.25 -9.32 7.11 99.48 0.71 -8.61 15 21 H 0.18 2.20 8.06 -2.91 -0.02 2.17 15 22 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 23 H 0.13 6.28 5.77 -2.91 -0.02 6.27 15 24 H 0.40 15.94 7.87 -92.70 -0.73 15.21 15 25 H 0.28 14.47 8.29 -92.71 -0.77 13.70 15 Total: -1.00 -67.44 256.78 4.98 -62.47 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.54 Total: 17.03 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 3.51 Total: 9.23 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -0.96 Total: -91.94 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.05 Total: -35.73 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -67.44 4.98 -62.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083350186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.146 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds