Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30481 * 1 3 3 Si 1.86810 * 120.00116 * 2 1 4 4 H 1.48492 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46929 * 300.00246 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00011 * 3 2 1 7 7 C 1.40420 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00683 * 180.02562 * 7 2 1 9 9 C 1.41213 * 119.99513 * 359.97438 * 7 2 1 10 10 O 1.22038 * 119.99926 * 0.02562 * 9 7 2 11 11 C 1.46808 * 119.99733 * 180.02562 * 9 7 2 12 12 C 1.35925 * 124.77443 * 180.02562 * 11 9 7 13 13 C 1.39927 * 115.21968 * 180.02562 * 12 11 9 14 14 C 1.41963 * 128.59567 * 180.27497 * 13 12 11 15 15 C 1.35819 * 120.52341 * 180.26800 * 14 13 12 16 16 C 1.39261 * 120.62341 * 359.45321 * 15 14 13 17 17 F 1.35101 * 119.92378 * 180.27840 * 16 15 14 18 18 C 1.38004 * 120.14867 * 0.25662 * 16 15 14 19 19 C 1.39559 * 120.23838 * 0.02562 * 18 16 15 20 20 S 1.75471 * 124.77568 * 0.03113 * 11 9 7 21 21 H 0.97006 * 119.99742 * 359.97438 * 1 2 3 22 22 H 1.07998 * 122.38980 * 359.97438 * 12 11 9 23 23 H 1.07999 * 119.73842 * 0.02562 * 14 13 12 24 24 H 1.08002 * 119.69189 * 179.73674 * 15 14 13 25 25 H 1.07997 * 119.87895 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6178 0.0000 4 1 3.6988 1.3464 -0.0006 5 1 1.8801 2.3965 -1.2125 6 1 1.8802 2.3965 1.2125 7 6 2.0070 -1.2160 -0.0005 8 1 3.0870 -1.2161 -0.0001 9 6 1.3009 -2.4390 -0.0005 10 8 0.0805 -2.4389 -0.0005 11 6 2.0350 -3.7103 -0.0005 12 6 1.4557 -4.9400 -0.0010 13 6 2.3468 -6.0188 -0.0004 14 6 2.0553 -7.4082 -0.0060 15 6 3.0587 -8.3235 0.0012 16 6 4.3905 -7.9163 0.0027 17 9 5.3773 -8.8389 0.0041 18 6 4.7043 -6.5724 0.0022 19 6 3.6900 -5.6138 0.0008 20 16 3.7836 -3.8564 0.0002 21 1 -0.4850 0.8401 0.0004 22 1 0.3842 -5.0747 -0.0011 23 1 1.0276 -7.7399 -0.0120 24 1 2.8216 -9.3772 0.0011 25 1 5.7386 -6.2615 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088023838.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -69.321086 kcal Electronic energy + Delta-G solvation = -14669.715323 eV Core-core repulsion = 11845.907041 eV Total energy + Delta-G solvation = -2823.808282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.93415 -40.50249 -38.90933 -35.67205 -34.78525 -32.22865 -30.58516 -28.78878 -25.31864 -24.49074 -22.62898 -20.75756 -19.52836 -18.74918 -17.82156 -17.05706 -16.77846 -16.63917 -16.44137 -15.56420 -15.16299 -14.93357 -14.75762 -14.23121 -13.94720 -13.85087 -13.54784 -13.13554 -12.83631 -12.77502 -12.26472 -12.03124 -11.76649 -11.55635 -11.08200 -10.78484 -9.85750 -9.37221 -8.73173 -8.49059 -7.23314 -0.66148 0.11733 0.51565 0.93271 1.05120 1.36059 1.37494 1.54946 2.16208 2.26932 2.55973 3.21190 3.48076 3.58010 3.83383 3.98637 4.13845 4.38142 4.57436 4.70584 4.90790 4.95061 5.05352 5.07289 5.30303 5.38340 5.79352 5.79968 6.55857 6.59809 8.06239 8.34942 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.048760 B = 0.005496 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.105200 B = 5093.693030 C = 5657.954833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.025 3.975 3 Si 0.995 3.005 4 H -0.245 1.245 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.383 3.617 10 O -0.587 6.587 11 C -0.210 4.210 12 C -0.112 4.112 13 C -0.095 4.095 14 C -0.047 4.047 15 C -0.143 4.143 16 C 0.107 3.893 17 F -0.135 7.135 18 C -0.121 4.121 19 C -0.148 4.148 20 S 0.156 5.844 21 H 0.287 0.713 22 H 0.136 0.864 23 H 0.161 0.839 24 H 0.173 0.827 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -10.783 -0.004 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.167 1.167 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.109 0.891 9 C 0.283 3.717 10 O -0.482 6.482 11 C -0.327 4.327 12 C -0.143 4.143 13 C -0.104 4.104 14 C -0.067 4.067 15 C -0.163 4.163 16 C 0.084 3.916 17 F -0.113 7.113 18 C -0.145 4.145 19 C -0.264 4.264 20 S 0.423 5.577 21 H 0.098 0.902 22 H 0.154 0.846 23 H 0.179 0.821 24 H 0.191 0.809 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.865 -9.641 -0.004 13.794 hybrid contribution -1.013 -0.278 0.001 1.050 sum 8.853 -9.918 -0.003 13.294 Atomic orbital electron populations 1.70050 1.09951 1.30396 1.29978 1.27262 0.95573 1.05540 0.91173 0.84999 0.79623 0.74720 0.79381 1.16737 1.18450 1.18440 1.21306 0.95748 0.92253 1.46953 0.89144 1.17847 0.88126 0.86464 0.79288 1.90545 1.16218 1.88868 1.52557 1.26000 0.98192 1.00656 1.07870 1.20706 1.00778 0.90198 1.02589 1.18459 0.91380 0.95240 1.05281 1.21025 1.01297 0.88650 0.95716 1.20920 0.89746 1.02384 1.03282 1.17592 0.85728 0.85325 1.02908 1.91503 1.60967 1.64975 1.93861 1.20444 0.99441 0.90163 1.04412 1.22996 0.96778 0.98602 1.08038 1.83715 1.02136 0.96535 1.75280 0.90183 0.84637 0.82123 0.80914 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.84 11.72 21.90 0.26 -44.58 15 2 C 0.02 1.33 5.50 85.42 0.47 1.80 15 3 Si 1.00 38.23 29.56 68.60 2.03 40.25 15 4 H -0.24 -8.78 7.11 99.48 0.71 -8.07 15 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 7 C -0.53 -29.50 8.99 23.53 0.21 -29.29 15 8 H 0.09 4.54 7.03 -2.91 -0.02 4.52 15 9 C 0.38 22.47 6.89 25.24 0.17 22.65 15 10 O -0.59 -38.98 15.30 -5.44 -0.08 -39.06 15 11 C -0.21 -10.11 6.34 23.98 0.15 -9.96 15 12 C -0.11 -4.79 9.89 22.14 0.22 -4.57 15 13 C -0.09 -3.27 5.86 -21.45 -0.13 -3.40 15 14 C -0.05 -1.19 10.03 22.63 0.23 -0.97 15 15 C -0.14 -3.03 9.92 21.95 0.22 -2.81 15 16 C 0.11 2.57 7.31 22.46 0.16 2.73 15 17 F -0.13 -3.06 17.26 44.97 0.78 -2.28 15 18 C -0.12 -3.25 10.05 22.53 0.23 -3.03 15 19 C -0.15 -4.92 6.48 23.09 0.15 -4.77 15 20 S 0.16 5.94 22.10 -56.49 -1.25 4.69 15 21 H 0.29 14.65 8.29 -92.70 -0.77 13.88 15 22 H 0.14 5.86 8.00 -2.91 -0.02 5.84 15 23 H 0.16 3.16 8.06 -2.91 -0.02 3.13 15 24 H 0.17 2.40 8.06 -2.91 -0.02 2.38 15 25 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 Total: -1.00 -70.11 252.01 5.05 -65.06 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.24 Total: 7.53 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 2.09 Total: -31.61 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.26 Total: -44.58 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.08 Total: -39.06 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.25 Total: 4.69 kcal Total: -70.11 5.05 -65.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088023838.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.266 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds