Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86806 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47397 * 119.99940 * 3 2 1 6 6 H 1.48504 * 109.46905 * 239.99905 * 3 2 1 7 7 C 1.39665 * 120.00257 * 179.72166 * 2 1 3 8 8 H 1.08000 * 119.99962 * 355.94535 * 7 2 1 9 9 C 1.41177 * 120.00608 * 175.94857 * 7 2 1 10 10 C 1.38020 * 122.77584 * 186.24466 * 9 7 2 11 11 S 1.70997 * 108.88231 * 180.02562 * 10 9 7 12 12 C 1.75919 * 90.76707 * 359.97438 * 11 10 9 13 13 C 1.47769 * 125.06199 * 180.02562 * 12 11 10 14 14 C 1.39574 * 119.72153 * 359.97438 * 13 12 11 15 15 C 1.38320 * 119.08741 * 179.97438 * 14 13 12 16 16 C 1.39021 * 118.49922 * 0.02562 * 15 14 13 17 17 F 1.35092 * 120.32480 * 179.97438 * 16 15 14 18 18 C 1.38633 * 119.34475 * 359.97438 * 16 15 14 19 19 N 1.31638 * 120.88201 * 359.74247 * 18 16 15 20 20 N 1.29835 * 109.86963 * 359.73523 * 12 11 10 21 21 H 0.96999 * 120.00382 * 175.58629 * 1 2 3 22 22 H 1.08002 * 125.56145 * 359.97438 * 10 9 7 23 23 H 1.08004 * 120.45892 * 0.02562 * 14 13 12 24 24 H 1.07997 * 120.74952 * 180.02562 * 15 14 13 25 25 H 1.08004 * 119.56283 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 1.2794 2.7465 -0.0006 5 1 3.0981 1.6965 1.2125 6 1 3.0981 1.6964 -1.2125 7 6 2.0087 -1.2095 0.0059 8 1 1.4707 -2.1433 0.0765 9 6 3.4178 -1.2115 -0.0805 10 6 4.1570 -2.3703 -0.2057 11 16 5.8162 -1.9631 -0.2784 12 6 5.4271 -0.2533 -0.1371 13 6 6.4166 0.8440 -0.1221 14 6 7.7772 0.5504 -0.2250 15 6 8.6920 1.5877 -0.2102 16 6 8.2174 2.8891 -0.0922 17 9 9.0782 3.9300 -0.0733 18 6 6.8519 3.1080 0.0058 19 7 6.0031 2.1021 -0.0165 20 7 4.1406 -0.0990 -0.0540 21 1 -0.4850 -0.8375 -0.0646 22 1 3.7535 -3.3711 -0.2497 23 1 8.1112 -0.4727 -0.3157 24 1 9.7510 1.3912 -0.2884 25 1 6.4793 4.1176 0.0972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094050901.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = 17.322083 kcal Electronic energy + Delta-G solvation = -15013.639513 eV Core-core repulsion = 12225.881112 eV Total energy + Delta-G solvation = -2787.758401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.04311 -40.03442 -38.28564 -33.53690 -32.56886 -31.76855 -28.90874 -26.00883 -24.82388 -23.80221 -21.57537 -19.36736 -18.44448 -17.70601 -17.04621 -16.75216 -15.86371 -15.76079 -14.60714 -14.08428 -13.95883 -13.84402 -13.21168 -13.06001 -12.86126 -12.64333 -12.06006 -11.96925 -10.81495 -10.70106 -10.23460 -10.04217 -9.61025 -9.51381 -9.46509 -8.99937 -8.43985 -8.14099 -7.62818 -7.23849 -4.63033 0.48732 1.06399 1.95958 2.16197 3.13434 3.42598 3.66573 3.74802 3.93747 4.06184 4.19481 4.25259 4.42859 4.52675 4.65354 4.81362 5.25394 5.30910 5.57835 5.67458 5.75219 6.25346 6.54415 6.74178 6.99705 7.53688 7.83290 8.00417 8.08258 8.64373 8.93820 10.09500 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.008259 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.502339 B = 3389.288623 C = 4436.576872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.043 3.957 3 Si 1.129 2.871 4 H -0.321 1.321 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.475 4.475 8 H 0.083 0.917 9 C 0.207 3.793 10 C -0.439 4.439 11 S 0.065 5.935 12 C 0.081 3.919 13 C 0.206 3.794 14 C -0.129 4.129 15 C -0.103 4.103 16 C 0.037 3.963 17 F -0.133 7.133 18 C 0.085 3.915 19 N -0.426 5.426 20 N -0.439 5.439 21 H 0.282 0.718 22 H 0.149 0.851 23 H 0.149 0.851 24 H 0.151 0.849 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 3.035 -0.555 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.177 4.177 3 Si 0.961 3.039 4 H -0.253 1.253 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.084 3.916 10 C -0.579 4.579 11 S 0.314 5.686 12 C -0.195 4.195 13 C 0.067 3.933 14 C -0.151 4.151 15 C -0.129 4.129 16 C 0.014 3.986 17 F -0.111 7.111 18 C -0.076 4.076 19 N -0.134 5.134 20 N -0.159 5.159 21 H 0.093 0.907 22 H 0.166 0.834 23 H 0.167 0.833 24 H 0.168 0.832 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 15.169 4.685 -0.485 15.883 hybrid contribution 0.051 -2.018 -0.045 2.019 sum 15.220 2.667 -0.529 15.461 Atomic orbital electron populations 1.70736 1.07868 1.32411 1.32981 1.27601 0.95528 1.05583 0.88973 0.82339 0.71024 0.70133 0.80401 1.25315 1.20410 1.20569 1.20083 0.88778 0.96476 1.45625 0.89850 1.18029 0.95182 0.84161 0.94193 1.25364 0.93240 1.02541 1.36748 1.82384 1.10634 1.01673 1.73897 1.24892 0.92430 0.93920 1.08268 1.18910 0.89570 0.89270 0.95517 1.21941 0.91945 1.00746 1.00447 1.21474 1.01461 0.90577 0.99414 1.18942 0.89006 0.84809 1.05811 1.91503 1.69353 1.56282 1.93987 1.23027 0.87369 0.99712 0.97477 1.67879 1.37431 0.98669 1.09457 1.65952 1.03408 1.31178 1.15400 0.90744 0.83356 0.83344 0.83167 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.27 13.67 55.53 0.76 -22.51 15 2 C 0.04 1.21 5.51 -17.36 -0.10 1.12 15 3 Si 1.13 29.41 25.58 -169.99 -4.35 25.07 15 4 H -0.32 -8.22 7.11 56.52 0.40 -7.82 15 5 H -0.28 -7.26 7.02 56.52 0.40 -6.86 15 6 H -0.28 -7.30 6.93 56.52 0.39 -6.91 15 7 C -0.48 -13.49 9.67 -37.93 -0.37 -13.86 15 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 15 9 C 0.21 5.53 6.28 -86.46 -0.54 4.98 15 10 C -0.44 -10.33 10.99 30.65 0.34 -10.00 15 11 S 0.06 1.24 22.04 -107.50 -2.37 -1.13 15 12 C 0.08 1.75 7.37 -14.50 -0.11 1.64 15 13 C 0.21 3.77 6.75 -83.03 -0.56 3.21 15 14 C -0.13 -1.73 9.63 -39.05 -0.38 -2.10 15 15 C -0.10 -1.15 10.15 -39.26 -0.40 -1.55 15 16 C 0.04 0.46 7.35 -39.15 -0.29 0.17 15 17 F -0.13 -1.54 17.28 2.25 0.04 -1.51 15 18 C 0.09 1.22 11.17 -17.49 -0.20 1.02 15 19 N -0.43 -8.00 10.24 -9.78 -0.10 -8.10 15 20 N -0.44 -11.28 5.23 -9.17 -0.05 -11.33 15 21 H 0.28 7.66 8.73 -40.82 -0.36 7.30 15 22 H 0.15 3.33 8.06 -52.49 -0.42 2.90 15 23 H 0.15 1.67 7.25 -52.48 -0.38 1.29 15 24 H 0.15 1.16 8.06 -52.49 -0.42 0.73 15 25 H 0.17 1.93 8.06 -52.48 -0.42 1.51 15 LS Contribution 248.16 15.07 3.74 3.74 Total: -1.00 -30.86 248.16 -6.16 -37.02 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: -1.24 Total: -5.90 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.59 Total: -15.36 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.61 Total: -41.94 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: -4.35 Total: 25.07 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.37 Total: -1.13 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.86 -6.16 -37.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094050901.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.343 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds