Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76202 * 99.99979 * 2 1 4 4 S 1.75175 * 124.58661 * 359.97438 * 3 2 1 5 5 C 1.75874 * 92.77302 * 180.02562 * 4 3 2 6 6 C 1.39796 * 129.68402 * 180.02562 * 5 4 3 7 7 C 1.37659 * 120.49267 * 179.97438 * 6 5 4 8 8 C 1.38650 * 120.12185 * 0.02562 * 7 6 5 9 9 C 1.37344 * 120.24064 * 359.97438 * 8 7 6 10 10 C 1.39321 * 110.67728 * 359.76197 * 5 4 3 11 11 C 1.37808 * 124.59193 * 179.97438 * 3 2 1 12 12 C 1.40600 * 123.26222 * 359.94185 * 11 3 2 13 13 H 1.08001 * 119.99625 * 139.48639 * 12 11 3 14 14 C 1.39471 * 120.00237 * 319.48496 * 12 11 3 15 15 N 1.31335 * 120.00252 * 322.54170 * 14 12 11 16 16 Si 1.86802 * 120.00012 * 142.81276 * 14 12 11 17 17 H 1.48505 * 109.46990 * 179.72387 * 16 14 12 18 18 H 1.48495 * 109.47240 * 299.72412 * 16 14 12 19 19 H 1.48502 * 109.46948 * 59.72861 * 16 14 12 20 20 H 1.09000 * 109.46564 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46818 * 299.99601 * 1 2 3 22 22 H 1.08993 * 109.47635 * 60.00238 * 1 2 3 23 23 H 1.07994 * 119.75124 * 359.93658 * 6 5 4 24 24 H 1.08003 * 119.93456 * 179.97438 * 7 6 5 25 25 H 1.08005 * 119.87722 * 179.97438 * 8 7 6 26 26 H 1.08004 * 119.78040 * 179.97438 * 9 8 7 27 27 H 0.97007 * 119.99464 * 354.64049 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 16 0.8684 2.9650 -0.0006 5 6 2.0410 4.2758 -0.0010 6 6 1.8343 5.6584 -0.0011 7 6 2.9041 6.5246 -0.0009 8 6 4.1996 6.0304 -0.0011 9 6 4.4229 4.6752 -0.0010 10 6 3.3404 3.7734 0.0048 11 6 3.3691 2.3087 0.0005 12 6 4.5595 1.5607 0.0023 13 1 5.3956 1.8748 -0.6049 14 6 4.6608 0.4129 0.7882 15 7 4.1022 0.3792 1.9764 16 14 5.5973 -1.0738 0.1539 17 1 5.5632 -2.1524 1.1741 18 1 4.9663 -1.5582 -1.1000 19 1 7.0068 -0.6925 -0.1163 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 0.8277 6.0498 -0.0020 24 1 2.7341 7.5912 -0.0014 25 1 5.0361 6.7136 -0.0013 26 1 5.4350 4.2983 -0.0016 27 1 3.6866 1.1769 2.3397 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147318630.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = 8.438947 kcal Electronic energy + Delta-G solvation = -13557.382853 eV Core-core repulsion = 11303.159675 eV Total energy + Delta-G solvation = -2254.223178 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.11646 -36.84936 -34.02522 -31.75984 -30.17749 -29.64046 -27.44810 -24.04239 -23.39649 -21.65056 -19.34493 -18.60911 -17.04531 -16.41382 -16.00965 -15.70121 -15.60720 -15.06548 -14.70737 -14.55301 -14.29099 -13.91463 -13.71750 -13.23184 -12.77974 -12.54255 -12.19358 -12.03670 -11.86669 -11.65809 -11.49283 -10.98519 -10.49410 -10.38408 -9.70202 -9.26089 -8.62210 -7.91031 -6.32991 0.06613 0.40025 0.90469 1.06043 1.36812 1.49601 1.58805 1.75517 1.85701 2.23087 2.36132 2.77192 3.14296 4.00822 4.17973 4.22951 4.23835 4.29030 4.56963 4.61294 4.76764 4.91747 5.18806 5.30864 5.46810 5.53930 5.64961 5.79446 6.10746 6.19002 6.61923 6.88365 8.04487 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.010847 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.680516 B = 2580.780488 C = 3634.483343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.091 6.091 3 C -0.384 4.384 4 S 0.023 5.977 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.105 4.105 8 C -0.127 4.127 9 C -0.096 4.096 10 C -0.094 4.094 11 C 0.078 3.922 12 C -0.541 4.541 13 H 0.070 0.930 14 C 0.029 3.971 15 N -0.768 5.768 16 Si 1.081 2.919 17 H -0.269 1.269 18 H -0.266 1.266 19 H -0.256 1.256 20 H 0.120 0.880 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.140 0.860 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.114 0.886 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 5.788 -2.673 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.146 5.854 3 C -0.610 4.610 4 S 0.281 5.719 5 C -0.262 4.262 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.148 4.148 9 C -0.116 4.116 10 C -0.104 4.104 11 C 0.063 3.937 12 C -0.573 4.573 13 H 0.088 0.912 14 C -0.193 4.193 15 N -0.389 5.389 16 Si 0.899 3.101 17 H -0.193 1.193 18 H -0.191 1.191 19 H -0.181 1.181 20 H 0.138 0.862 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.157 0.843 24 H 0.184 0.816 25 H 0.174 0.826 26 H 0.133 0.867 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.251 3.052 -2.238 4.989 hybrid contribution 0.145 2.556 -0.205 2.568 sum -3.106 5.608 -2.442 6.860 Atomic orbital electron populations 1.23535 0.96739 1.06987 1.04590 1.84914 1.04532 1.01578 1.94414 1.24973 0.97627 0.97686 1.40701 1.82504 1.09204 0.95067 1.85116 1.22820 0.96619 0.98397 1.08324 1.20823 1.00825 0.89099 1.02206 1.21365 0.91354 1.00675 0.99166 1.21257 0.98569 0.93853 1.01079 1.21160 0.97380 0.93546 0.99490 1.20014 0.93531 0.94153 1.02725 1.17530 0.92491 0.89182 0.94451 1.19757 0.99642 1.10471 1.27382 0.91197 1.27635 0.96537 1.02963 0.92170 1.70725 1.21837 1.32714 1.13583 0.83469 0.76388 0.73026 0.77174 1.19316 1.19116 1.18077 0.86163 0.91186 0.90609 0.84256 0.81567 0.82560 0.86746 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.44 113.37 1.07 -4.33 15 2 S -0.09 -4.32 19.89 -56.49 -1.12 -5.44 15 3 C -0.38 -19.76 6.40 67.72 0.43 -19.33 15 4 S 0.02 1.03 21.52 -56.49 -1.22 -0.19 15 5 C -0.15 -6.34 6.41 22.91 0.15 -6.19 15 6 C -0.11 -3.61 10.06 22.51 0.23 -3.39 15 7 C -0.11 -3.00 10.03 22.23 0.22 -2.78 15 8 C -0.13 -3.95 10.01 22.16 0.22 -3.73 15 9 C -0.10 -3.92 9.82 22.71 0.22 -3.69 15 10 C -0.09 -4.54 6.00 -20.22 -0.12 -4.66 15 11 C 0.08 4.19 5.00 -20.65 -0.10 4.08 15 12 C -0.54 -29.53 8.56 23.14 0.20 -29.33 15 13 H 0.07 3.79 8.04 -2.91 -0.02 3.76 15 14 C 0.03 1.50 3.40 85.06 0.29 1.79 15 15 N -0.77 -42.09 12.52 21.77 0.27 -41.82 15 16 Si 1.08 45.67 30.05 68.60 2.06 47.73 15 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 20 H 0.12 3.58 8.14 -2.40 -0.02 3.56 15 21 H 0.07 2.55 7.97 -2.39 -0.02 2.53 15 22 H 0.07 2.65 7.97 -2.40 -0.02 2.63 15 23 H 0.14 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 25 H 0.16 3.58 8.06 -2.91 -0.02 3.55 15 26 H 0.11 4.66 8.03 -2.91 -0.02 4.63 15 27 H 0.27 15.92 8.15 -92.70 -0.76 15.16 15 Total: -1.00 -62.25 262.90 3.99 -58.26 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.19 Total: 13.00 kcal Atomic # 6 Polarization: -74.35 SS G_CDS: 2.81 Total: -71.55 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.27 Total: -41.82 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.06 Total: 47.73 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.34 Total: -5.63 kcal Total: -62.25 3.99 -58.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147318630.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.701 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds