Wall clock time and date at job start Mon Mar 30 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47118 * 85.18939 * 3 2 1 5 5 H 1.48494 * 109.47463 * 205.18734 * 3 2 1 6 6 H 1.48498 * 109.47406 * 325.19235 * 3 2 1 7 7 C 1.39932 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99606 * 197.45651 * 7 2 1 9 9 C 1.41350 * 119.99842 * 17.45124 * 7 2 1 10 10 C 1.40741 * 120.21378 * 24.92558 * 9 7 2 11 11 C 1.37681 * 119.76843 * 179.74056 * 10 9 7 12 12 Cl 1.73597 * 119.88839 * 180.25306 * 11 10 9 13 13 C 1.38888 * 120.22195 * 0.50553 * 11 10 9 14 14 Cl 1.73593 * 119.77712 * 179.74188 * 13 11 10 15 15 C 1.38887 * 120.44329 * 359.77046 * 13 11 10 16 16 Cl 1.73597 * 119.88877 * 179.97438 * 15 13 11 17 17 C 1.37677 * 120.22078 * 359.97000 * 15 13 11 18 18 H 0.96996 * 120.00583 * 359.97438 * 1 2 3 19 19 H 1.07996 * 120.11457 * 359.97438 * 10 9 7 20 20 H 1.08004 * 120.11418 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3881 2.1052 1.3952 5 1 3.5870 1.4131 -0.5958 6 1 1.4943 2.6213 -0.7992 7 6 2.0081 -1.2118 -0.0005 8 1 3.0507 -1.2333 0.2800 9 6 1.3502 -2.4076 -0.3682 10 6 0.2204 -2.3655 -1.2065 11 6 -0.4101 -3.5363 -1.5631 12 17 -1.7999 -3.4885 -2.6023 13 6 0.0588 -4.7551 -1.0901 14 17 -0.7491 -6.2236 -1.5418 15 6 1.1694 -4.8067 -0.2578 16 17 1.7428 -6.3378 0.3256 17 6 1.8171 -3.6475 0.1061 18 1 -0.4851 0.8400 0.0004 19 1 -0.1483 -1.4184 -1.5717 20 1 2.6804 -3.6896 0.7538 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165555605.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:10 Heat of formation + Delta-G solvation = -31.326339 kcal Electronic energy + Delta-G solvation = -11633.338361 eV Core-core repulsion = 9099.204380 eV Total energy + Delta-G solvation = -2534.133982 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 249.941 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.79377 -37.51197 -37.29006 -37.05108 -35.45083 -31.72976 -31.07409 -27.39594 -23.39223 -22.97970 -19.59079 -17.83033 -17.01670 -16.40888 -16.26193 -15.00402 -14.91722 -14.76382 -13.63295 -13.31843 -13.13735 -12.91998 -12.80815 -12.46298 -12.27546 -12.13229 -11.80743 -11.69857 -11.62876 -11.46791 -10.98966 -9.47187 -9.39857 -8.82300 -6.55844 0.46564 0.56085 0.93335 1.41629 1.46031 1.53324 1.58750 1.60991 2.16972 2.44026 3.35049 4.38699 4.53211 4.75829 4.98342 5.10913 5.15896 5.43934 5.68863 5.84853 6.31189 6.60005 6.66955 8.13526 Molecular weight = 249.94amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.008632 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.416608 B = 3242.987036 C = 4214.282813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.097 0.903 9 C 0.102 3.898 10 C -0.166 4.166 11 C 0.008 3.992 12 Cl -0.074 7.074 13 C -0.168 4.168 14 Cl -0.074 7.074 15 C 0.023 3.977 16 Cl -0.068 7.068 17 C -0.217 4.217 18 H 0.298 0.702 19 H 0.130 0.870 20 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -1.821 -1.127 2.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.177 1.177 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.115 0.885 9 C 0.098 3.902 10 C -0.186 4.186 11 C -0.019 4.019 12 Cl -0.046 7.046 13 C -0.197 4.197 14 Cl -0.046 7.046 15 C -0.005 4.005 16 Cl -0.039 7.039 17 C -0.237 4.237 18 H 0.109 0.891 19 H 0.147 0.853 20 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.712 -1.940 -1.192 2.385 hybrid contribution -0.107 0.300 -0.021 0.319 sum 0.606 -1.640 -1.213 2.128 Atomic orbital electron populations 1.69811 1.09213 1.31844 1.31600 1.26888 0.95495 1.04937 0.90813 0.85086 0.79321 0.75288 0.79602 1.18550 1.17722 1.19084 1.19999 0.98894 0.91244 1.38701 0.88479 1.17742 0.90763 0.92883 0.88764 1.21259 0.99864 0.95629 1.01895 1.20446 0.91323 0.93141 0.97026 1.98280 1.41500 1.98858 1.65934 1.19831 1.01508 0.86210 1.12159 1.98248 1.79285 1.34922 1.92155 1.20315 0.95143 0.86974 0.98073 1.98290 1.88241 1.29887 1.87519 1.21072 1.05081 0.90201 1.07385 0.89074 0.85274 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.03 10.96 21.82 0.24 -36.79 14 2 C 0.04 1.65 5.14 85.25 0.44 2.09 14 3 Si 0.99 33.09 29.59 68.60 2.03 35.12 14 4 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 5 H -0.25 -8.33 7.11 99.48 0.71 -7.62 14 6 H -0.27 -8.64 7.11 99.48 0.71 -7.93 14 7 C -0.46 -21.51 9.05 23.45 0.21 -21.30 14 8 H 0.10 4.24 7.90 -2.91 -0.02 4.22 14 9 C 0.10 4.93 5.57 -21.29 -0.12 4.81 14 10 C -0.17 -7.99 8.46 22.75 0.19 -7.80 14 11 C 0.01 0.38 6.31 22.29 0.14 0.52 14 12 Cl -0.07 -2.94 27.93 -2.72 -0.08 -3.01 14 13 C -0.17 -7.30 6.35 22.58 0.14 -7.15 14 14 Cl -0.07 -2.84 26.92 -2.72 -0.07 -2.91 14 15 C 0.02 0.96 6.31 22.29 0.14 1.10 14 16 Cl -0.07 -2.47 27.93 -2.72 -0.08 -2.54 14 17 C -0.22 -9.66 9.56 22.75 0.22 -9.44 14 18 H 0.30 12.36 8.30 -92.71 -0.77 11.59 14 19 H 0.13 6.42 6.17 -2.91 -0.02 6.40 14 20 H 0.13 5.30 8.06 -2.91 -0.02 5.28 14 Total: -1.00 -47.85 231.85 4.70 -43.15 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.29 Total: 4.16 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 1.37 Total: -37.17 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.24 Total: -36.79 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Atomic # 17 Polarization: -8.24 SS G_CDS: -0.23 Total: -8.47 kcal Total: -47.85 4.70 -43.15 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165555605.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.828 kcal (2) G-P(sol) polarization free energy of solvation -47.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds