Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99864 * 2 1 4 4 H 1.08001 * 119.99433 * 202.33864 * 3 2 1 5 5 C 1.38809 * 120.00136 * 22.33660 * 3 2 1 6 6 N 1.31615 * 120.00271 * 13.58776 * 5 3 2 7 7 Si 1.86810 * 119.99761 * 193.58970 * 5 3 2 8 8 H 1.48493 * 109.47124 * 59.99879 * 7 5 3 9 9 H 1.48499 * 109.46853 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47046 * 299.99887 * 7 5 3 11 11 C 1.46493 * 119.99792 * 180.27277 * 2 1 3 12 12 C 1.53002 * 109.47318 * 89.99999 * 11 2 1 13 13 C 1.53002 * 109.47091 * 295.00063 * 12 11 2 14 14 C 1.53002 * 109.47101 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46969 * 60.00106 * 14 13 12 16 16 C 1.52997 * 109.47417 * 59.99997 * 15 14 13 17 17 C 1.53002 * 109.47053 * 299.99951 * 16 15 14 18 18 C 1.52999 * 109.47319 * 59.99741 * 17 16 15 19 19 C 1.53002 * 109.47101 * 299.99880 * 17 16 15 20 20 C 1.52996 * 109.47298 * 174.99974 * 12 11 2 21 21 C 1.53002 * 109.47122 * 299.99881 * 15 14 13 22 22 H 1.09000 * 109.47599 * 274.97726 * 1 2 3 23 23 H 1.09010 * 109.47311 * 34.97269 * 1 2 3 24 24 H 1.09000 * 109.47643 * 154.97054 * 1 2 3 25 25 H 0.97005 * 120.00059 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47315 * 209.99665 * 11 2 1 27 27 H 1.08997 * 109.47454 * 329.99966 * 11 2 1 28 28 H 1.08996 * 109.46916 * 54.99768 * 12 11 2 29 29 H 1.08998 * 109.46947 * 59.99830 * 13 12 11 30 30 H 1.08999 * 109.46735 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47235 * 299.99906 * 14 13 12 32 32 H 1.09002 * 109.47043 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47527 * 179.97438 * 16 15 14 34 34 H 1.08999 * 109.47602 * 59.99706 * 16 15 14 35 35 H 1.08996 * 109.47235 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.46954 * 59.99866 * 18 17 16 37 37 H 1.08992 * 109.47388 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.46947 * 299.99773 * 19 17 16 39 39 H 1.09002 * 109.47141 * 179.97438 * 19 17 16 40 40 H 1.08999 * 109.47419 * 299.99802 * 20 12 11 41 41 H 1.09001 * 109.47415 * 299.99966 * 21 15 14 42 42 H 1.09003 * 109.47371 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5337 2.3429 0.4569 6 7 0.4064 2.2659 1.1317 7 14 2.3050 4.0094 0.1138 8 1 2.4095 4.2139 -1.3533 9 1 1.4579 5.0775 0.7029 10 1 3.6602 4.0616 0.7186 11 6 2.1974 -1.2687 -0.0060 12 6 2.4524 -1.7035 -1.4506 13 6 1.1178 -2.0034 -2.1361 14 6 1.3728 -2.4376 -3.5809 15 6 2.2443 -3.6951 -3.5892 16 6 1.5262 -4.8182 -2.8383 17 6 1.2713 -4.3840 -1.3935 18 6 0.3998 -3.1265 -1.3851 19 6 2.6059 -4.0841 -0.7080 20 6 3.3237 -2.9612 -1.4584 21 6 3.5788 -3.3953 -2.9037 22 1 -0.3634 0.0892 1.0238 23 1 -0.3634 0.8422 -0.5891 24 1 -0.3634 -0.9311 -0.4348 25 1 -0.0242 3.0745 1.4506 26 1 3.1499 -1.1408 0.5084 27 1 1.6084 -2.0308 0.5042 28 1 2.9641 -0.9037 -1.9858 29 1 0.4972 -1.1074 -2.1305 30 1 0.4220 -2.6508 -4.0693 31 1 1.8843 -1.6375 -4.1159 32 1 2.4255 -4.0048 -4.6185 33 1 2.1469 -5.7143 -2.8446 34 1 0.5754 -5.0319 -3.3265 35 1 0.7593 -5.1839 -0.8586 36 1 -0.5510 -3.3401 -1.8735 37 1 0.2186 -2.8168 -0.3559 38 1 3.2267 -4.9800 -0.7139 39 1 2.4242 -3.7743 0.3212 40 1 4.2745 -2.7476 -0.9701 41 1 4.0905 -2.5952 -3.4387 42 1 4.1999 -4.2910 -2.9100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216362508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -8.342841 kcal Electronic energy + Delta-G solvation = -20072.093976 eV Core-core repulsion = 17436.855288 eV Total energy + Delta-G solvation = -2635.238687 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17414 -35.68257 -32.77814 -32.32710 -32.22090 -30.42227 -27.07870 -25.77395 -25.41055 -23.91911 -21.52309 -20.99686 -20.92962 -19.71297 -17.02586 -16.36819 -15.01572 -14.70974 -14.45539 -14.17345 -13.94992 -13.61444 -13.07561 -12.96590 -12.82866 -12.64933 -12.39001 -12.07207 -11.86558 -11.57963 -11.03545 -10.83661 -10.74741 -10.62291 -10.56201 -10.49744 -10.40473 -10.28440 -10.04178 -9.76049 -9.68514 -9.26742 -9.14308 -9.08408 -8.42174 -6.59378 -5.61940 -3.06672 3.43580 3.48848 3.50022 4.57835 4.81058 4.82312 4.84147 5.40174 5.42301 5.48654 5.54110 5.54967 5.57902 5.65365 5.68958 5.72568 5.75858 5.85572 5.97414 6.05933 6.10849 6.17175 6.23293 6.25593 6.33808 6.35548 6.42775 6.49560 6.50396 6.56010 6.67752 6.78567 6.81834 6.97112 7.02470 7.11591 7.20463 7.48387 7.83045 7.89785 8.50866 9.35238 10.00476 10.49501 11.42472 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036076 B = 0.006679 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.952169 B = 4191.261402 C = 4358.051162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.600 5.600 3 C -0.249 4.249 4 H 0.065 0.935 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.155 3.845 12 C -0.094 4.094 13 C -0.075 4.075 14 C -0.107 4.107 15 C -0.084 4.084 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.109 4.109 19 C -0.107 4.107 20 C -0.081 4.081 21 C -0.105 4.105 22 H 0.025 0.975 23 H 0.036 0.964 24 H 0.007 0.993 25 H 0.251 0.749 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -13.770 -7.402 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.323 5.323 3 C -0.379 4.379 4 H 0.083 0.917 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.731 3.269 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.028 3.972 12 C -0.115 4.115 13 C -0.094 4.094 14 C -0.145 4.145 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.100 4.100 21 C -0.142 4.142 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.169 -13.617 -7.305 15.605 hybrid contribution 0.379 1.042 -0.222 1.131 sum 2.548 -12.575 -7.528 14.876 Atomic orbital electron populations 1.20880 0.82936 0.95621 0.99095 1.43828 1.01667 1.00636 1.86136 1.19143 0.97721 0.85703 1.35303 0.91713 1.24963 0.97986 0.98272 0.98625 1.70070 1.19445 1.26904 1.39123 0.86392 0.78390 0.84222 0.77889 1.21268 1.21738 1.21068 1.20861 0.95664 0.88147 0.92524 1.21757 0.94536 0.95071 1.00144 1.21004 0.97340 0.97917 0.93107 1.21552 0.98708 0.96673 0.97551 1.21018 0.95527 0.95671 0.98014 1.21504 0.99622 0.97249 0.95779 1.21018 0.96298 0.97421 0.95459 1.21609 0.97226 0.94630 1.01174 1.21527 0.95778 0.97700 0.99392 1.21057 0.98444 0.95635 0.94837 1.21520 0.96232 1.00189 0.96300 0.95688 0.94512 0.97466 0.93905 0.94159 0.94216 0.91665 0.90138 0.92881 0.92450 0.92293 0.92737 0.92607 0.92137 0.93054 0.91221 0.93004 0.91637 0.91840 0.92400 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 7.88 59.85 0.47 4.42 16 2 N -0.60 -15.15 2.75 -181.12 -0.50 -15.65 16 3 C -0.25 -6.96 9.66 -15.06 -0.15 -7.10 16 4 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 5 C 0.00 -0.02 5.09 -17.43 -0.09 -0.11 16 6 N -0.91 -27.12 10.70 55.49 0.59 -26.52 16 7 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.16 3.22 4.43 -4.04 -0.02 3.20 16 12 C -0.09 -1.66 2.14 -90.62 -0.19 -1.85 16 13 C -0.08 -1.25 2.14 -90.62 -0.19 -1.44 16 14 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 15 C -0.08 -1.06 3.19 -90.62 -0.29 -1.35 16 16 C -0.10 -1.24 5.19 -26.73 -0.14 -1.38 16 17 C -0.08 -1.09 3.19 -90.62 -0.29 -1.38 16 18 C -0.11 -1.64 4.28 -26.73 -0.11 -1.75 16 19 C -0.11 -1.43 4.92 -26.75 -0.13 -1.56 16 20 C -0.08 -1.18 2.72 -90.62 -0.25 -1.42 16 21 C -0.10 -1.36 5.19 -26.71 -0.14 -1.50 16 22 H 0.02 0.68 7.36 -51.93 -0.38 0.30 16 23 H 0.04 0.98 7.30 -51.92 -0.38 0.61 16 24 H 0.01 0.15 4.59 -51.93 -0.24 -0.09 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.04 0.86 8.04 -51.93 -0.42 0.45 16 27 H 0.04 0.79 4.76 -51.93 -0.25 0.54 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.57 5.99 -51.93 -0.31 1.26 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.16 5.23 -51.93 -0.27 0.88 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.93 6.54 -51.93 -0.34 0.59 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -29.09 293.27 -9.38 -38.46 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -7.21 Total: -3.10 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.66 Total: -14.92 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.10 Total: -42.17 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.09 -9.38 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216362508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.122 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds