Wall clock time and date at job start Mon Mar 30 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99864 * 2 1 4 4 H 1.08001 * 119.99433 * 202.33864 * 3 2 1 5 5 C 1.38809 * 120.00136 * 22.33660 * 3 2 1 6 6 N 1.31615 * 120.00271 * 13.58776 * 5 3 2 7 7 Si 1.86810 * 119.99761 * 193.58970 * 5 3 2 8 8 H 1.48493 * 109.47124 * 59.99879 * 7 5 3 9 9 H 1.48499 * 109.46853 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47046 * 299.99887 * 7 5 3 11 11 C 1.46493 * 119.99792 * 180.27277 * 2 1 3 12 12 C 1.53002 * 109.47318 * 89.99999 * 11 2 1 13 13 C 1.53002 * 109.47091 * 295.00063 * 12 11 2 14 14 C 1.53002 * 109.47101 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46969 * 60.00106 * 14 13 12 16 16 C 1.52997 * 109.47417 * 59.99997 * 15 14 13 17 17 C 1.53002 * 109.47053 * 299.99951 * 16 15 14 18 18 C 1.52999 * 109.47319 * 59.99741 * 17 16 15 19 19 C 1.53002 * 109.47101 * 299.99880 * 17 16 15 20 20 C 1.52996 * 109.47298 * 174.99974 * 12 11 2 21 21 C 1.53002 * 109.47122 * 299.99881 * 15 14 13 22 22 H 1.09000 * 109.47599 * 274.97726 * 1 2 3 23 23 H 1.09010 * 109.47311 * 34.97269 * 1 2 3 24 24 H 1.09000 * 109.47643 * 154.97054 * 1 2 3 25 25 H 0.97005 * 120.00059 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47315 * 209.99665 * 11 2 1 27 27 H 1.08997 * 109.47454 * 329.99966 * 11 2 1 28 28 H 1.08996 * 109.46916 * 54.99768 * 12 11 2 29 29 H 1.08998 * 109.46947 * 59.99830 * 13 12 11 30 30 H 1.08999 * 109.46735 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47235 * 299.99906 * 14 13 12 32 32 H 1.09002 * 109.47043 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47527 * 179.97438 * 16 15 14 34 34 H 1.08999 * 109.47602 * 59.99706 * 16 15 14 35 35 H 1.08996 * 109.47235 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.46954 * 59.99866 * 18 17 16 37 37 H 1.08992 * 109.47388 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.46947 * 299.99773 * 19 17 16 39 39 H 1.09002 * 109.47141 * 179.97438 * 19 17 16 40 40 H 1.08999 * 109.47419 * 299.99802 * 20 12 11 41 41 H 1.09001 * 109.47415 * 299.99966 * 21 15 14 42 42 H 1.09003 * 109.47371 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5337 2.3429 0.4569 6 7 0.4064 2.2659 1.1317 7 14 2.3050 4.0094 0.1138 8 1 2.4095 4.2139 -1.3533 9 1 1.4579 5.0775 0.7029 10 1 3.6602 4.0616 0.7186 11 6 2.1974 -1.2687 -0.0060 12 6 2.4524 -1.7035 -1.4506 13 6 1.1178 -2.0034 -2.1361 14 6 1.3728 -2.4376 -3.5809 15 6 2.2443 -3.6951 -3.5892 16 6 1.5262 -4.8182 -2.8383 17 6 1.2713 -4.3840 -1.3935 18 6 0.3998 -3.1265 -1.3851 19 6 2.6059 -4.0841 -0.7080 20 6 3.3237 -2.9612 -1.4584 21 6 3.5788 -3.3953 -2.9037 22 1 -0.3634 0.0892 1.0238 23 1 -0.3634 0.8422 -0.5891 24 1 -0.3634 -0.9311 -0.4348 25 1 -0.0242 3.0745 1.4506 26 1 3.1499 -1.1408 0.5084 27 1 1.6084 -2.0308 0.5042 28 1 2.9641 -0.9037 -1.9858 29 1 0.4972 -1.1074 -2.1305 30 1 0.4220 -2.6508 -4.0693 31 1 1.8843 -1.6375 -4.1159 32 1 2.4255 -4.0048 -4.6185 33 1 2.1469 -5.7143 -2.8446 34 1 0.5754 -5.0319 -3.3265 35 1 0.7593 -5.1839 -0.8586 36 1 -0.5510 -3.3401 -1.8735 37 1 0.2186 -2.8168 -0.3559 38 1 3.2267 -4.9800 -0.7139 39 1 2.4242 -3.7743 0.3212 40 1 4.2745 -2.7476 -0.9701 41 1 4.0905 -2.5952 -3.4387 42 1 4.1999 -4.2910 -2.9100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216362508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:55 Heat of formation + Delta-G solvation = -22.944998 kcal Electronic energy + Delta-G solvation = -20072.727173 eV Core-core repulsion = 17436.855288 eV Total energy + Delta-G solvation = -2635.871884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36477 -37.54388 -34.38095 -33.49265 -33.39035 -32.26942 -28.67753 -27.72901 -26.63309 -25.39497 -23.18875 -22.20398 -22.11160 -21.12570 -18.74094 -17.97262 -16.91105 -16.00800 -15.86366 -15.60450 -15.27457 -15.13281 -14.59563 -14.35950 -14.11117 -14.04273 -13.86654 -13.29549 -13.18870 -13.08494 -12.85447 -12.68035 -12.41308 -12.29095 -12.07354 -11.91298 -11.71651 -11.66165 -11.62618 -11.43443 -11.30211 -10.66150 -10.38146 -10.34209 -10.32785 -8.69579 -7.80379 -5.27831 1.43135 1.45921 1.52525 2.50914 3.30522 3.64116 3.70587 3.75144 3.88130 4.28212 4.32654 4.41974 4.43129 4.45304 4.54066 4.55837 4.58671 4.64476 4.75105 4.79975 4.90515 4.95549 4.99204 5.03127 5.08268 5.20373 5.24673 5.25093 5.25821 5.30248 5.31810 5.38449 5.41569 5.50274 5.62897 5.69258 5.70898 5.74958 5.80962 5.83210 6.34821 7.17749 7.92676 8.35981 9.21874 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036076 B = 0.006679 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.952169 B = 4191.261402 C = 4358.051162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.615 5.615 3 C -0.259 4.259 4 H 0.064 0.936 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.281 1.281 9 H -0.293 1.293 10 H -0.275 1.275 11 C 0.156 3.844 12 C -0.083 4.083 13 C -0.075 4.075 14 C -0.105 4.105 15 C -0.081 4.081 16 C -0.100 4.100 17 C -0.081 4.081 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.079 4.079 21 C -0.102 4.102 22 H -0.004 1.004 23 H 0.007 0.993 24 H 0.040 0.960 25 H 0.247 0.753 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -16.105 -8.778 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.338 5.338 3 C -0.390 4.390 4 H 0.082 0.918 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.207 1.207 9 H -0.219 1.219 10 H -0.201 1.201 11 C 0.030 3.970 12 C -0.104 4.104 13 C -0.094 4.094 14 C -0.143 4.143 15 C -0.100 4.100 16 C -0.137 4.137 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.098 4.098 21 C -0.140 4.140 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.091 -15.984 -8.693 18.456 hybrid contribution 0.110 1.750 0.218 1.767 sum 3.201 -14.234 -8.475 16.873 Atomic orbital electron populations 1.20575 0.83034 0.95968 0.96918 1.44053 1.01918 1.01591 1.86227 1.19454 0.97881 0.87041 1.34579 0.91812 1.25737 0.98740 1.01689 0.98880 1.70241 1.20824 1.27376 1.40362 0.85362 0.77737 0.79770 0.77739 1.20748 1.21881 1.20093 1.21013 0.94605 0.86564 0.94802 1.21523 0.95816 0.95944 0.97148 1.20924 0.96031 0.97230 0.95193 1.21523 0.99755 0.97568 0.95426 1.21039 0.94714 0.94799 0.99408 1.21498 1.00492 0.97424 0.94291 1.21032 0.95501 0.96501 0.96916 1.21568 0.98161 0.95182 0.99512 1.21529 0.96397 0.97973 0.98352 1.21031 0.97606 0.94400 0.96767 1.21512 0.96961 1.00959 0.94540 0.98594 0.97454 0.94194 0.94390 0.95382 0.93129 0.94717 0.93962 0.91789 0.93646 0.90210 0.90563 0.91582 0.90406 0.91985 0.93410 0.90473 0.93017 0.92166 0.93149 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 7.88 127.77 1.01 10.33 16 2 N -0.61 -32.19 2.75 -726.94 -2.00 -34.19 16 3 C -0.26 -14.93 9.66 84.03 0.81 -14.12 16 4 H 0.06 3.60 7.87 -2.91 -0.02 3.58 16 5 C -0.06 -3.27 5.09 84.86 0.43 -2.84 16 6 N -0.94 -57.97 10.70 21.65 0.23 -57.74 16 7 Si 0.97 46.87 29.58 68.60 2.03 48.90 16 8 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 9 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 C 0.16 6.61 4.43 86.38 0.38 6.99 16 12 C -0.08 -2.97 2.14 -10.79 -0.02 -2.99 16 13 C -0.08 -2.48 2.14 -10.79 -0.02 -2.50 16 14 C -0.11 -2.85 5.19 30.59 0.16 -2.69 16 15 C -0.08 -1.76 3.19 -10.80 -0.03 -1.79 16 16 C -0.10 -1.90 5.19 30.59 0.16 -1.74 16 17 C -0.08 -1.84 3.19 -10.79 -0.03 -1.87 16 18 C -0.11 -3.05 4.28 30.59 0.13 -2.92 16 19 C -0.11 -2.52 4.92 30.58 0.15 -2.37 16 20 C -0.08 -2.17 2.72 -10.80 -0.03 -2.20 16 21 C -0.10 -2.34 5.19 30.61 0.16 -2.18 16 22 H 0.00 -0.24 7.36 -2.39 -0.02 -0.26 16 23 H 0.01 0.38 7.30 -2.38 -0.02 0.36 16 24 H 0.04 1.76 4.59 -2.39 -0.01 1.75 16 25 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 26 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 27 H 0.05 2.03 4.76 -2.39 -0.01 2.02 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.69 5.99 -2.39 -0.01 1.68 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.55 5.23 -2.39 -0.01 1.54 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.38 6.54 -2.39 -0.02 1.36 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -64.34 293.27 4.48 -59.86 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.97 Total: 6.07 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.25 Total: -22.90 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.77 Total: -91.92 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -64.34 4.48 -59.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216362508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.912 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds