Wall clock time and date at job start Mon Mar 30 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.36936 * 120.00146 * 275.16872 * 3 2 1 5 5 H 1.08006 * 120.00516 * 145.40615 * 4 3 2 6 6 C 1.38819 * 119.99851 * 325.41149 * 4 3 2 7 7 N 1.31617 * 119.99448 * 337.90640 * 6 4 3 8 8 Si 1.86791 * 120.00036 * 157.90959 * 6 4 3 9 9 H 1.48497 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47276 * 120.00198 * 8 6 4 11 11 H 1.48501 * 109.47027 * 239.99732 * 8 6 4 12 12 C 1.46504 * 120.00340 * 95.16384 * 3 2 1 13 13 C 1.52997 * 109.47063 * 60.00149 * 12 3 2 14 14 C 1.53000 * 109.47161 * 179.97438 * 13 12 3 15 15 C 1.52995 * 109.46710 * 60.00455 * 14 13 12 16 16 C 1.52997 * 109.47462 * 299.99610 * 15 14 13 17 17 C 1.53004 * 109.47086 * 300.00559 * 16 15 14 18 18 C 1.53004 * 109.47247 * 59.99339 * 17 16 15 19 19 C 1.52996 * 109.47364 * 299.99864 * 14 13 12 20 20 C 1.52997 * 109.47516 * 180.02562 * 12 3 2 21 21 C 1.52996 * 109.47024 * 59.99962 * 16 15 14 22 22 H 1.09001 * 109.47198 * 60.00190 * 1 2 3 23 23 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47584 * 300.00061 * 1 2 3 25 25 H 1.08997 * 109.47295 * 240.00086 * 2 1 3 26 26 H 1.09001 * 109.47198 * 119.99810 * 2 1 3 27 27 H 0.97008 * 119.99560 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47541 * 300.00502 * 13 12 3 29 29 H 1.09005 * 109.47217 * 59.99830 * 13 12 3 30 30 H 1.09008 * 109.46534 * 179.97438 * 14 13 12 31 31 H 1.09006 * 109.47096 * 179.97438 * 15 14 13 32 32 H 1.08997 * 109.47575 * 59.99936 * 15 14 13 33 33 H 1.08997 * 109.47524 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.46915 * 299.99896 * 17 16 15 35 35 H 1.08995 * 109.47491 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47395 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47190 * 300.00222 * 19 14 13 38 38 H 1.08998 * 109.46854 * 179.97438 * 19 14 13 39 39 H 1.09002 * 109.47119 * 300.00551 * 20 12 3 40 40 H 1.09004 * 109.47113 * 59.99729 * 20 12 3 41 41 H 1.08998 * 109.47301 * 180.02562 * 21 16 15 42 42 H 1.09004 * 109.46972 * 60.00694 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1458 2.0623 -1.1811 5 1 1.9525 3.1244 -1.2156 6 6 2.5235 1.3878 -2.3340 7 7 3.1669 0.2430 -2.2457 8 14 2.1188 2.1048 -4.0107 9 1 1.3959 3.3905 -3.8378 10 1 3.3761 2.3408 -4.7648 11 1 1.2620 1.1530 -4.7624 12 6 2.3702 2.0338 1.2636 13 6 3.4880 1.2466 1.9501 14 6 3.8560 1.9285 3.2694 15 6 2.6281 1.9711 4.1812 16 6 1.5101 2.7583 3.4947 17 6 1.9880 4.1848 3.2156 18 6 3.2160 4.1421 2.3039 19 6 4.3339 3.3548 2.9904 20 6 2.8473 3.4606 0.9852 21 6 1.1423 2.0765 2.1754 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.4311 -0.2283 -3.0514 28 1 3.1478 0.2302 2.1485 29 1 4.3630 1.2164 1.3007 30 1 4.6521 1.3672 3.7587 31 1 2.8903 2.4565 5.1213 32 1 2.2877 0.9549 4.3800 33 1 0.6355 2.7891 4.1444 34 1 2.2502 4.6705 4.1556 35 1 1.1918 4.7455 2.7262 36 1 3.5567 5.1583 2.1054 37 1 5.2087 3.3244 2.3408 38 1 4.5956 3.8407 3.9304 39 1 3.7221 3.4309 0.3356 40 1 2.0506 4.0212 0.4962 41 1 0.3461 2.6376 1.6861 42 1 0.8018 1.0603 2.3741 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216362969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:15 Heat of formation + Delta-G solvation = -7.086058 kcal Electronic energy + Delta-G solvation = -20449.078997 eV Core-core repulsion = 17813.894808 eV Total energy + Delta-G solvation = -2635.184189 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.81199 -35.73416 -32.22274 -32.08618 -31.78381 -30.46681 -27.90122 -25.46703 -25.25778 -23.84901 -21.50854 -20.86974 -20.61498 -19.20693 -17.07009 -16.32097 -15.01417 -14.26318 -14.03354 -13.83888 -13.80437 -13.45130 -13.12359 -12.91142 -12.76305 -12.38967 -12.08520 -11.93725 -11.72945 -11.43109 -11.28768 -10.85673 -10.67106 -10.47424 -10.34672 -10.25733 -10.23656 -10.12544 -9.93924 -9.77790 -9.55540 -9.18814 -9.11281 -8.83193 -8.38416 -6.46577 -5.64705 -3.21498 3.39553 3.48631 3.50666 4.53203 5.00103 5.02148 5.02913 5.41500 5.57077 5.63268 5.64147 5.74063 5.78977 5.79904 5.89028 5.98416 6.04776 6.06560 6.27765 6.29614 6.31980 6.38276 6.39883 6.44318 6.53721 6.61703 6.63068 6.68333 6.75068 6.78840 6.82961 6.93071 6.97684 7.05074 7.11559 7.31671 7.39261 7.45512 7.86398 7.98370 8.62194 9.31056 9.96890 10.53035 11.32038 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.008637 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.204837 B = 3241.229723 C = 3513.740970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 N -0.576 5.576 4 C -0.245 4.245 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.290 1.290 12 C 0.208 3.792 13 C -0.117 4.117 14 C -0.085 4.085 15 C -0.103 4.103 16 C -0.085 4.085 17 C -0.104 4.104 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.091 4.091 21 C -0.116 4.116 22 H 0.047 0.953 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.021 0.979 27 H 0.251 0.749 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 4.114 11.037 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.296 5.296 4 C -0.375 4.375 5 H 0.081 0.919 6 C -0.194 4.194 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.217 1.217 12 C 0.119 3.881 13 C -0.156 4.156 14 C -0.104 4.104 15 C -0.141 4.141 16 C -0.104 4.104 17 C -0.141 4.141 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.155 4.155 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.114 0.886 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.896 4.009 10.878 11.627 hybrid contribution -0.260 0.192 -0.940 0.994 sum -1.156 4.200 9.938 10.851 Atomic orbital electron populations 1.22383 1.01089 0.98285 1.00571 1.20945 0.89967 0.86851 1.01418 1.43960 1.73513 1.11401 1.00717 1.19083 1.39233 0.93561 0.85624 0.91912 1.25060 0.98071 0.97889 0.98365 1.69956 1.38702 1.17446 1.27149 0.86405 0.77756 0.78669 0.85070 1.20262 1.21918 1.21694 1.19602 0.90467 0.91447 0.86537 1.22025 1.00271 0.98690 0.94618 1.21080 0.96519 0.96042 0.96792 1.21496 0.95671 0.99563 0.97345 1.21069 0.97005 0.95083 0.97223 1.21509 0.97673 0.96330 0.98621 1.21126 0.94967 0.98387 0.96198 1.21495 0.97833 0.95444 0.99323 1.21519 1.01377 0.95430 0.94590 1.22084 0.99477 0.99449 0.94487 0.93377 0.95271 0.94506 0.88589 0.96063 0.93897 0.93046 0.92000 0.92458 0.93023 0.92582 0.92460 0.93031 0.92444 0.92138 0.92241 0.93103 0.91383 0.92287 0.92614 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.00 37.15 0.37 -3.08 16 2 C 0.13 3.18 5.29 -4.05 -0.02 3.16 16 3 N -0.58 -13.92 2.36 -158.39 -0.37 -14.29 16 4 C -0.25 -6.51 8.24 -15.06 -0.12 -6.63 16 5 H 0.06 1.67 6.36 -52.48 -0.33 1.34 16 6 C 0.01 0.15 5.01 -17.43 -0.09 0.06 16 7 N -0.89 -25.45 11.24 55.49 0.62 -24.83 16 8 Si 0.89 21.67 29.61 -169.99 -5.03 16.63 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 C 0.21 4.22 0.86 -131.82 -0.11 4.11 16 13 C -0.12 -2.27 4.46 -26.73 -0.12 -2.38 16 14 C -0.09 -1.34 3.19 -90.62 -0.29 -1.63 16 15 C -0.10 -1.48 5.19 -26.74 -0.14 -1.62 16 16 C -0.08 -1.28 3.20 -90.62 -0.29 -1.57 16 17 C -0.10 -1.50 5.19 -26.73 -0.14 -1.63 16 18 C -0.09 -1.38 3.19 -90.64 -0.29 -1.67 16 19 C -0.10 -1.55 5.19 -26.73 -0.14 -1.69 16 20 C -0.09 -1.78 3.31 -26.76 -0.09 -1.87 16 21 C -0.12 -2.10 3.51 -26.73 -0.09 -2.19 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.72 6.02 -51.93 -0.31 0.41 16 25 H 0.10 2.60 5.31 -51.93 -0.28 2.33 16 26 H 0.02 0.48 6.44 -51.93 -0.33 0.14 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 1.03 6.66 -51.93 -0.35 0.68 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.47 7.77 -51.93 -0.40 1.07 16 40 H 0.06 1.20 7.10 -51.93 -0.37 0.83 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.02 6.57 -51.93 -0.34 0.68 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -27.47 296.78 -9.22 -36.69 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.35 Total: -0.04 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.56 Total: -18.63 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.25 Total: -39.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.47 -9.22 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216362969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.603 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds