Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.36936 * 120.00146 * 275.16872 * 3 2 1 5 5 H 1.08006 * 120.00516 * 145.40615 * 4 3 2 6 6 C 1.38819 * 119.99851 * 325.41149 * 4 3 2 7 7 N 1.31617 * 119.99448 * 337.90640 * 6 4 3 8 8 Si 1.86791 * 120.00036 * 157.90959 * 6 4 3 9 9 H 1.48497 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47276 * 120.00198 * 8 6 4 11 11 H 1.48501 * 109.47027 * 239.99732 * 8 6 4 12 12 C 1.46504 * 120.00340 * 95.16384 * 3 2 1 13 13 C 1.52997 * 109.47063 * 60.00149 * 12 3 2 14 14 C 1.53000 * 109.47161 * 179.97438 * 13 12 3 15 15 C 1.52995 * 109.46710 * 60.00455 * 14 13 12 16 16 C 1.52997 * 109.47462 * 299.99610 * 15 14 13 17 17 C 1.53004 * 109.47086 * 300.00559 * 16 15 14 18 18 C 1.53004 * 109.47247 * 59.99339 * 17 16 15 19 19 C 1.52996 * 109.47364 * 299.99864 * 14 13 12 20 20 C 1.52997 * 109.47516 * 180.02562 * 12 3 2 21 21 C 1.52996 * 109.47024 * 59.99962 * 16 15 14 22 22 H 1.09001 * 109.47198 * 60.00190 * 1 2 3 23 23 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47584 * 300.00061 * 1 2 3 25 25 H 1.08997 * 109.47295 * 240.00086 * 2 1 3 26 26 H 1.09001 * 109.47198 * 119.99810 * 2 1 3 27 27 H 0.97008 * 119.99560 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47541 * 300.00502 * 13 12 3 29 29 H 1.09005 * 109.47217 * 59.99830 * 13 12 3 30 30 H 1.09008 * 109.46534 * 179.97438 * 14 13 12 31 31 H 1.09006 * 109.47096 * 179.97438 * 15 14 13 32 32 H 1.08997 * 109.47575 * 59.99936 * 15 14 13 33 33 H 1.08997 * 109.47524 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.46915 * 299.99896 * 17 16 15 35 35 H 1.08995 * 109.47491 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47395 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47190 * 300.00222 * 19 14 13 38 38 H 1.08998 * 109.46854 * 179.97438 * 19 14 13 39 39 H 1.09002 * 109.47119 * 300.00551 * 20 12 3 40 40 H 1.09004 * 109.47113 * 59.99729 * 20 12 3 41 41 H 1.08998 * 109.47301 * 180.02562 * 21 16 15 42 42 H 1.09004 * 109.46972 * 60.00694 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1458 2.0623 -1.1811 5 1 1.9525 3.1244 -1.2156 6 6 2.5235 1.3878 -2.3340 7 7 3.1669 0.2430 -2.2457 8 14 2.1188 2.1048 -4.0107 9 1 1.3959 3.3905 -3.8378 10 1 3.3761 2.3408 -4.7648 11 1 1.2620 1.1530 -4.7624 12 6 2.3702 2.0338 1.2636 13 6 3.4880 1.2466 1.9501 14 6 3.8560 1.9285 3.2694 15 6 2.6281 1.9711 4.1812 16 6 1.5101 2.7583 3.4947 17 6 1.9880 4.1848 3.2156 18 6 3.2160 4.1421 2.3039 19 6 4.3339 3.3548 2.9904 20 6 2.8473 3.4606 0.9852 21 6 1.1423 2.0765 2.1754 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.4311 -0.2283 -3.0514 28 1 3.1478 0.2302 2.1485 29 1 4.3630 1.2164 1.3007 30 1 4.6521 1.3672 3.7587 31 1 2.8903 2.4565 5.1213 32 1 2.2877 0.9549 4.3800 33 1 0.6355 2.7891 4.1444 34 1 2.2502 4.6705 4.1556 35 1 1.1918 4.7455 2.7262 36 1 3.5567 5.1583 2.1054 37 1 5.2087 3.3244 2.3408 38 1 4.5956 3.8407 3.9304 39 1 3.7221 3.4309 0.3356 40 1 2.0506 4.0212 0.4962 41 1 0.3461 2.6376 1.6861 42 1 0.8018 1.0603 2.3741 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216362969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = -20.244193 kcal Electronic energy + Delta-G solvation = -20449.649577 eV Core-core repulsion = 17813.894808 eV Total energy + Delta-G solvation = -2635.754769 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19844 -37.52039 -33.79699 -33.46301 -33.37770 -32.19199 -29.74236 -26.92272 -26.61924 -25.72575 -23.19292 -22.15483 -22.03302 -20.88816 -18.45804 -18.26259 -16.84166 -16.00005 -15.57978 -15.28267 -15.21575 -15.07113 -14.54675 -14.47057 -14.09221 -13.91325 -13.66421 -13.35375 -13.19781 -13.17235 -13.03725 -12.78793 -12.47886 -12.15729 -11.97055 -11.77081 -11.67078 -11.58960 -11.46305 -11.37844 -11.27931 -10.71023 -10.57420 -10.34106 -10.28474 -8.48255 -7.70993 -5.31565 1.41836 1.45594 1.54494 2.52901 3.29731 3.52788 3.74468 3.78081 4.10698 4.34798 4.37141 4.43675 4.48216 4.52418 4.55145 4.58946 4.60586 4.63578 4.79270 4.91441 4.93392 4.97028 4.99878 5.02970 5.11522 5.20362 5.23169 5.24506 5.30909 5.31766 5.34546 5.48432 5.49352 5.51035 5.62682 5.67814 5.75405 5.79323 5.87933 6.02525 6.54480 7.25363 8.01179 8.50230 9.21379 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.008637 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.204837 B = 3241.229723 C = 3513.740970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.591 5.591 4 C -0.241 4.241 5 H 0.057 0.943 6 C -0.046 4.046 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.295 1.295 11 H -0.293 1.293 12 C 0.197 3.803 13 C -0.110 4.110 14 C -0.083 4.083 15 C -0.099 4.099 16 C -0.082 4.082 17 C -0.100 4.100 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.086 4.086 21 C -0.108 4.108 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.246 0.754 28 H 0.039 0.961 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 5.525 13.894 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.312 5.312 4 C -0.372 4.372 5 H 0.075 0.925 6 C -0.242 4.242 7 N -0.566 5.566 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.222 1.222 11 H -0.219 1.219 12 C 0.110 3.890 13 C -0.149 4.149 14 C -0.102 4.102 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.137 4.137 18 C -0.104 4.104 19 C -0.139 4.139 20 C -0.124 4.124 21 C -0.147 4.147 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.613 5.437 13.758 14.881 hybrid contribution -0.018 -0.262 -1.825 1.843 sum -1.631 5.175 11.934 13.109 Atomic orbital electron populations 1.22202 0.98824 0.99650 1.00235 1.20826 0.91738 0.86678 0.99948 1.44218 1.73877 1.11490 1.01567 1.19246 1.37673 0.93433 0.86879 0.92499 1.25678 0.98756 0.98558 1.01193 1.70095 1.40370 1.18776 1.27381 0.85514 0.77186 0.78147 0.81524 1.19438 1.22191 1.21949 1.19882 0.92045 0.91595 0.85526 1.21891 0.98161 0.98521 0.96340 1.21083 0.98086 0.96286 0.94699 1.21492 0.94127 1.00025 0.97951 1.21099 0.98420 0.95186 0.95431 1.21508 0.96556 0.96062 0.99588 1.21124 0.96354 0.98668 0.94223 1.21500 0.96863 0.94955 1.00557 1.21431 0.99108 0.95334 0.96570 1.21941 0.97484 0.99428 0.95818 0.95342 0.93072 0.93011 0.91985 0.95607 0.94437 0.94248 0.95981 0.91056 0.89691 0.92479 0.89971 0.89679 0.92576 0.90683 0.93686 0.89574 0.95011 0.93948 0.93982 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 10.00 71.98 0.72 -5.58 16 2 C 0.13 6.55 5.29 86.38 0.46 7.01 16 3 N -0.59 -29.53 2.36 -655.03 -1.54 -31.08 16 4 C -0.24 -13.31 8.24 84.04 0.69 -12.62 16 5 H 0.06 3.15 6.36 -2.91 -0.02 3.13 16 6 C -0.05 -2.60 5.01 84.86 0.43 -2.18 16 7 N -0.92 -55.10 11.24 21.65 0.24 -54.86 16 8 Si 0.95 45.98 29.61 68.60 2.03 48.01 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 C 0.20 8.08 0.86 3.60 0.00 8.08 16 13 C -0.11 -4.31 4.46 30.59 0.14 -4.18 16 14 C -0.08 -2.39 3.19 -10.80 -0.03 -2.43 16 15 C -0.10 -2.39 5.19 30.59 0.16 -2.23 16 16 C -0.08 -2.15 3.20 -10.79 -0.03 -2.19 16 17 C -0.10 -2.44 5.19 30.60 0.16 -2.28 16 18 C -0.08 -2.46 3.19 -10.81 -0.03 -2.50 16 19 C -0.10 -2.74 5.19 30.59 0.16 -2.58 16 20 C -0.09 -3.42 3.31 30.58 0.10 -3.32 16 21 C -0.11 -3.74 3.51 30.59 0.11 -3.64 16 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 1.99 6.02 -2.38 -0.01 1.98 16 25 H 0.06 3.52 5.31 -2.39 -0.01 3.51 16 26 H 0.03 1.20 6.44 -2.39 -0.02 1.18 16 27 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 28 H 0.04 1.60 6.66 -2.39 -0.02 1.58 16 29 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 31 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.03 1.44 7.77 -2.39 -0.02 1.42 16 40 H 0.04 1.76 7.10 -2.38 -0.02 1.75 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.73 6.57 -2.38 -0.02 1.72 16 Total: -1.00 -62.13 296.78 4.72 -57.41 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.97 Total: 11.14 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.02 Total: -30.62 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.30 Total: -85.94 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -62.13 4.72 -57.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216362969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.167 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds