Wall clock time and date at job start Mon Mar 30 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46957 * 2 1 4 4 C 1.36936 * 120.00273 * 95.03409 * 3 2 1 5 5 H 1.07997 * 119.99817 * 219.50627 * 4 3 2 6 6 C 1.38813 * 119.99841 * 39.50006 * 4 3 2 7 7 N 1.31623 * 119.99813 * 209.64785 * 6 4 3 8 8 Si 1.86793 * 120.00133 * 29.65009 * 6 4 3 9 9 H 1.48500 * 109.47624 * 85.63252 * 8 6 4 10 10 H 1.48500 * 109.47345 * 205.63493 * 8 6 4 11 11 H 1.48507 * 109.47208 * 325.62827 * 8 6 4 12 12 C 1.46501 * 119.99588 * 275.03012 * 3 2 1 13 13 C 1.52992 * 109.47328 * 304.05179 * 12 3 2 14 14 C 1.52996 * 109.47332 * 299.99945 * 13 12 3 15 15 C 1.52995 * 109.47179 * 300.00054 * 14 13 12 16 16 C 1.52999 * 109.47353 * 299.99901 * 15 14 13 17 17 C 1.52996 * 109.46897 * 59.99927 * 16 15 14 18 18 C 1.53004 * 109.47233 * 179.97438 * 13 12 3 19 19 C 1.53002 * 109.47320 * 60.00346 * 17 16 15 20 20 C 1.52999 * 109.46853 * 299.99681 * 19 17 16 21 21 C 1.53001 * 109.47354 * 60.00034 * 15 14 13 22 22 H 1.09001 * 109.47017 * 55.14053 * 1 2 3 23 23 H 1.09003 * 109.46739 * 175.13699 * 1 2 3 24 24 H 1.08996 * 109.47270 * 295.13332 * 1 2 3 25 25 H 1.09000 * 109.46829 * 119.99344 * 2 1 3 26 26 H 1.08993 * 109.47659 * 239.99677 * 2 1 3 27 27 H 0.96997 * 119.99833 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.46710 * 64.05667 * 12 3 2 29 29 H 1.08996 * 109.47149 * 60.00186 * 13 12 3 30 30 H 1.09001 * 109.47027 * 60.00140 * 14 13 12 31 31 H 1.09004 * 109.47412 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47416 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.46865 * 299.99866 * 16 15 14 34 34 H 1.08996 * 109.47215 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.47027 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.47441 * 300.00852 * 18 13 12 37 37 H 1.08995 * 109.47280 * 179.97438 * 18 13 12 38 38 H 1.09002 * 109.47131 * 180.02562 * 19 17 16 39 39 H 1.08996 * 109.47246 * 59.99706 * 19 17 16 40 40 H 1.08995 * 109.46986 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47471 * 179.97438 * 21 15 14 42 42 H 1.08998 * 109.47113 * 59.99304 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3447 1.9922 1.1813 5 1 2.0930 3.0304 1.3399 6 6 2.9989 1.2770 2.1750 7 7 2.8147 1.5893 3.4403 8 14 4.1405 -0.1286 1.7165 9 1 5.4948 0.4076 1.4277 10 1 4.2193 -1.0906 2.8450 11 1 3.6148 -0.8205 0.5122 12 6 2.1576 2.1089 -1.2639 13 6 3.0619 1.3177 -2.2109 14 6 4.4399 1.1399 -1.5704 15 6 5.0589 2.5132 -1.3027 16 6 5.2043 3.2732 -2.6227 17 6 3.8263 3.4510 -3.2632 18 6 3.2068 2.0774 -3.5312 19 6 2.9219 4.2423 -2.3161 20 6 2.7765 3.4823 -0.9962 21 6 4.1546 3.3045 -0.3556 22 1 -0.3633 0.5874 -0.8433 23 1 -0.3633 -1.0240 -0.0871 24 1 -0.3633 0.4365 0.9303 25 1 1.8933 -0.5137 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 3.2721 1.0898 4.1346 28 1 1.1758 2.2356 -1.7202 29 1 2.6209 0.3394 -2.4017 30 1 4.3364 0.5985 -0.6301 31 1 5.0841 0.5758 -2.2450 32 1 6.0405 2.3866 -0.8460 33 1 5.8487 2.7095 -3.2974 34 1 5.6449 4.2517 -2.4319 35 1 3.9299 3.9920 -4.2037 36 1 2.2250 2.2038 -3.9873 37 1 3.8514 1.5139 -4.2057 38 1 1.9400 4.3685 -2.7722 39 1 3.3629 5.2206 -2.1254 40 1 2.1319 4.0457 -0.3217 41 1 4.5958 4.2827 -0.1645 42 1 4.0510 2.7630 0.5847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216363040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:19 Heat of formation + Delta-G solvation = 7.040915 kcal Electronic energy + Delta-G solvation = -20860.176116 eV Core-core repulsion = 18225.604519 eV Total energy + Delta-G solvation = -2634.571598 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.87891 -35.87276 -32.37438 -32.02565 -31.69444 -31.12197 -28.46409 -25.58230 -25.21303 -23.15235 -21.73358 -20.75204 -20.60471 -19.74837 -17.08097 -16.38634 -15.24227 -14.49385 -14.45043 -13.85543 -13.80409 -13.37505 -13.16218 -12.79463 -12.68431 -12.57656 -12.21499 -11.87093 -11.78512 -11.72927 -11.68342 -11.17842 -10.74450 -10.52606 -10.34153 -10.27345 -10.23346 -10.18296 -9.85903 -9.72242 -9.30342 -9.05464 -8.94394 -8.84785 -8.26184 -6.61414 -6.02040 -3.31132 3.37376 3.49231 3.52330 4.55724 4.91152 5.05594 5.07036 5.18079 5.44034 5.71351 5.73101 5.80952 5.81449 5.85208 5.89496 5.95964 6.02798 6.07828 6.14220 6.22914 6.30784 6.38902 6.42322 6.44561 6.46547 6.49511 6.53367 6.58980 6.64135 6.66628 6.73281 6.79256 6.97834 7.03598 7.13847 7.20835 7.23656 7.30093 7.70820 8.08982 8.45246 9.08080 9.75594 10.23425 11.13062 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.011568 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.991129 B = 2419.852905 C = 2699.140256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 N -0.599 5.599 4 C -0.251 4.251 5 H 0.078 0.922 6 C 0.040 3.960 7 N -0.889 5.889 8 Si 0.845 3.155 9 H -0.285 1.285 10 H -0.303 1.303 11 H -0.255 1.255 12 C 0.188 3.812 13 C -0.103 4.103 14 C -0.105 4.105 15 C -0.081 4.081 16 C -0.105 4.105 17 C -0.082 4.082 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.067 4.067 21 C -0.126 4.126 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 1.173 -11.954 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 N -0.322 5.322 4 C -0.380 4.380 5 H 0.096 0.904 6 C -0.161 4.161 7 N -0.529 5.529 8 Si 0.673 3.327 9 H -0.213 1.213 10 H -0.231 1.231 11 H -0.181 1.181 12 C 0.082 3.918 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.100 4.100 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.146 4.146 20 C -0.086 4.086 21 C -0.163 4.163 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.553 1.162 -11.755 11.914 hybrid contribution 0.820 -0.881 -0.197 1.220 sum 2.373 0.281 -11.952 12.188 Atomic orbital electron populations 1.22262 0.99673 0.98890 1.01541 1.21157 0.91704 0.86631 0.98925 1.44208 1.74607 1.11309 1.02078 1.18514 1.31600 0.98167 0.89684 0.90426 1.25540 0.98384 0.97178 0.94992 1.69986 1.41748 1.42053 0.99106 0.87647 0.83606 0.83582 0.77819 1.21284 1.23088 1.18093 1.20368 0.93900 0.91038 0.86482 1.21549 0.97012 0.98883 0.94860 1.21536 0.95232 0.96642 1.00783 1.20975 0.98414 0.95470 0.95098 1.21542 0.96034 0.99592 0.97104 1.21014 0.95490 0.96048 0.97531 1.21500 0.99681 0.95769 0.97156 1.21580 0.98506 0.98080 0.96404 1.20913 0.97651 0.95358 0.94654 1.22054 0.93059 0.99087 1.02084 0.93995 0.94669 0.92524 0.92722 0.94872 0.92812 0.95453 0.92349 0.90857 0.94206 0.92754 0.93189 0.92767 0.92480 0.92671 0.93027 0.92849 0.92653 0.91160 0.94457 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.24 37.16 0.38 -2.76 16 2 C 0.14 3.04 4.40 -4.04 -0.02 3.02 16 3 N -0.60 -13.49 1.47 -165.66 -0.24 -13.74 16 4 C -0.25 -6.50 6.09 -15.06 -0.09 -6.59 16 5 H 0.08 2.19 6.66 -52.49 -0.35 1.84 16 6 C 0.04 1.10 4.66 -17.43 -0.08 1.01 16 7 N -0.89 -26.14 13.97 55.49 0.78 -25.36 16 8 Si 0.84 21.03 22.95 -169.99 -3.90 17.13 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.26 -6.00 4.91 56.52 0.28 -5.72 16 12 C 0.19 3.69 2.61 -67.93 -0.18 3.51 16 13 C -0.10 -1.83 2.46 -90.62 -0.22 -2.05 16 14 C -0.10 -1.99 5.04 -26.74 -0.13 -2.13 16 15 C -0.08 -1.48 3.19 -90.62 -0.29 -1.77 16 16 C -0.11 -1.60 5.19 -26.73 -0.14 -1.74 16 17 C -0.08 -1.20 3.19 -90.59 -0.29 -1.49 16 18 C -0.10 -1.54 5.20 -26.70 -0.14 -1.68 16 19 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 20 C -0.07 -1.27 2.20 -90.62 -0.20 -1.47 16 21 C -0.13 -2.53 4.80 -26.73 -0.13 -2.66 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.05 1.28 4.47 -51.93 -0.23 1.05 16 26 H 0.03 0.67 6.23 -51.93 -0.32 0.35 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.05 6.59 -51.93 -0.34 0.71 16 30 H 0.07 1.59 3.09 -51.93 -0.16 1.43 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.44 7.00 -51.93 -0.36 1.08 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.12 2.93 4.01 -51.93 -0.21 2.72 16 LS Contribution 282.34 15.07 4.25 4.25 Total: -1.00 -27.21 282.34 -7.94 -35.16 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.16 Total: 1.16 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.67 Total: -18.60 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.53 Total: -39.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -3.90 Total: 17.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.21 -7.94 -35.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216363040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.198 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds