Wall clock time and date at job start Mon Mar 30 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46957 * 2 1 4 4 C 1.36936 * 120.00273 * 95.03409 * 3 2 1 5 5 H 1.07997 * 119.99817 * 219.50627 * 4 3 2 6 6 C 1.38813 * 119.99841 * 39.50006 * 4 3 2 7 7 N 1.31623 * 119.99813 * 209.64785 * 6 4 3 8 8 Si 1.86793 * 120.00133 * 29.65009 * 6 4 3 9 9 H 1.48500 * 109.47624 * 85.63252 * 8 6 4 10 10 H 1.48500 * 109.47345 * 205.63493 * 8 6 4 11 11 H 1.48507 * 109.47208 * 325.62827 * 8 6 4 12 12 C 1.46501 * 119.99588 * 275.03012 * 3 2 1 13 13 C 1.52992 * 109.47328 * 304.05179 * 12 3 2 14 14 C 1.52996 * 109.47332 * 299.99945 * 13 12 3 15 15 C 1.52995 * 109.47179 * 300.00054 * 14 13 12 16 16 C 1.52999 * 109.47353 * 299.99901 * 15 14 13 17 17 C 1.52996 * 109.46897 * 59.99927 * 16 15 14 18 18 C 1.53004 * 109.47233 * 179.97438 * 13 12 3 19 19 C 1.53002 * 109.47320 * 60.00346 * 17 16 15 20 20 C 1.52999 * 109.46853 * 299.99681 * 19 17 16 21 21 C 1.53001 * 109.47354 * 60.00034 * 15 14 13 22 22 H 1.09001 * 109.47017 * 55.14053 * 1 2 3 23 23 H 1.09003 * 109.46739 * 175.13699 * 1 2 3 24 24 H 1.08996 * 109.47270 * 295.13332 * 1 2 3 25 25 H 1.09000 * 109.46829 * 119.99344 * 2 1 3 26 26 H 1.08993 * 109.47659 * 239.99677 * 2 1 3 27 27 H 0.96997 * 119.99833 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.46710 * 64.05667 * 12 3 2 29 29 H 1.08996 * 109.47149 * 60.00186 * 13 12 3 30 30 H 1.09001 * 109.47027 * 60.00140 * 14 13 12 31 31 H 1.09004 * 109.47412 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47416 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.46865 * 299.99866 * 16 15 14 34 34 H 1.08996 * 109.47215 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.47027 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.47441 * 300.00852 * 18 13 12 37 37 H 1.08995 * 109.47280 * 179.97438 * 18 13 12 38 38 H 1.09002 * 109.47131 * 180.02562 * 19 17 16 39 39 H 1.08996 * 109.47246 * 59.99706 * 19 17 16 40 40 H 1.08995 * 109.46986 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47471 * 179.97438 * 21 15 14 42 42 H 1.08998 * 109.47113 * 59.99304 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3447 1.9922 1.1813 5 1 2.0930 3.0304 1.3399 6 6 2.9989 1.2770 2.1750 7 7 2.8147 1.5893 3.4403 8 14 4.1405 -0.1286 1.7165 9 1 5.4948 0.4076 1.4277 10 1 4.2193 -1.0906 2.8450 11 1 3.6148 -0.8205 0.5122 12 6 2.1576 2.1089 -1.2639 13 6 3.0619 1.3177 -2.2109 14 6 4.4399 1.1399 -1.5704 15 6 5.0589 2.5132 -1.3027 16 6 5.2043 3.2732 -2.6227 17 6 3.8263 3.4510 -3.2632 18 6 3.2068 2.0774 -3.5312 19 6 2.9219 4.2423 -2.3161 20 6 2.7765 3.4823 -0.9962 21 6 4.1546 3.3045 -0.3556 22 1 -0.3633 0.5874 -0.8433 23 1 -0.3633 -1.0240 -0.0871 24 1 -0.3633 0.4365 0.9303 25 1 1.8933 -0.5137 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 3.2721 1.0898 4.1346 28 1 1.1758 2.2356 -1.7202 29 1 2.6209 0.3394 -2.4017 30 1 4.3364 0.5985 -0.6301 31 1 5.0841 0.5758 -2.2450 32 1 6.0405 2.3866 -0.8460 33 1 5.8487 2.7095 -3.2974 34 1 5.6449 4.2517 -2.4319 35 1 3.9299 3.9920 -4.2037 36 1 2.2250 2.2038 -3.9873 37 1 3.8514 1.5139 -4.2057 38 1 1.9400 4.3685 -2.7722 39 1 3.3629 5.2206 -2.1254 40 1 2.1319 4.0457 -0.3217 41 1 4.5958 4.2827 -0.1645 42 1 4.0510 2.7630 0.5847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216363040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:19 Heat of formation + Delta-G solvation = -7.539926 kcal Electronic energy + Delta-G solvation = -20860.808389 eV Core-core repulsion = 18225.604519 eV Total energy + Delta-G solvation = -2635.203870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.29813 -37.58609 -34.12755 -33.45679 -33.26820 -32.64557 -30.16272 -27.20768 -26.60268 -24.87611 -23.32020 -22.10583 -22.07308 -21.30600 -18.62725 -18.25304 -17.12667 -16.10977 -15.87920 -15.42869 -15.17217 -15.03849 -14.61034 -14.51513 -14.24283 -14.05690 -13.71972 -13.51884 -13.35421 -13.17840 -13.13801 -12.78101 -12.58922 -12.14634 -11.87404 -11.85171 -11.61229 -11.57934 -11.50903 -11.38832 -11.04247 -10.67891 -10.41089 -10.30386 -10.14898 -8.49942 -8.16138 -5.39253 1.33707 1.43261 1.47841 2.48210 3.06925 3.40141 3.74869 3.79003 3.98171 4.36911 4.37629 4.39925 4.48461 4.49645 4.54243 4.56785 4.60850 4.68776 4.74225 4.76661 4.83242 4.93070 5.00028 5.07113 5.09234 5.12390 5.20597 5.25474 5.26410 5.29069 5.32682 5.35732 5.38892 5.54091 5.61057 5.74169 5.77539 5.81152 6.00106 6.06206 6.31342 7.12527 7.77010 8.21828 9.03841 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.011568 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.991129 B = 2419.852905 C = 2699.140256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 N -0.608 5.608 4 C -0.212 4.212 5 H 0.043 0.957 6 C -0.011 4.011 7 N -0.942 5.942 8 Si 0.898 3.102 9 H -0.295 1.295 10 H -0.319 1.319 11 H -0.231 1.231 12 C 0.183 3.817 13 C -0.098 4.098 14 C -0.110 4.110 15 C -0.082 4.082 16 C -0.100 4.100 17 C -0.079 4.079 18 C -0.098 4.098 19 C -0.102 4.102 20 C -0.068 4.068 21 C -0.126 4.126 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.257 0.743 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 0.881 -16.208 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.009 3.991 3 N -0.332 5.332 4 C -0.342 4.342 5 H 0.061 0.939 6 C -0.207 4.207 7 N -0.587 5.587 8 Si 0.728 3.272 9 H -0.223 1.223 10 H -0.249 1.249 11 H -0.155 1.155 12 C 0.078 3.922 13 C -0.118 4.118 14 C -0.148 4.148 15 C -0.101 4.101 16 C -0.137 4.137 17 C -0.098 4.098 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.086 4.086 21 C -0.163 4.163 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.719 0.857 -16.070 16.184 hybrid contribution 0.708 -0.708 1.117 1.500 sum 2.426 0.149 -14.953 15.149 Atomic orbital electron populations 1.22124 0.97726 1.00809 1.00643 1.21234 0.93299 0.85788 0.98731 1.44353 1.74751 1.11826 1.02236 1.18249 1.28864 0.96506 0.90611 0.93915 1.25922 1.00151 0.99799 0.94802 1.70087 1.44051 1.44420 1.00104 0.86786 0.81632 0.81096 0.77660 1.22277 1.24854 1.15518 1.20544 0.94896 0.91303 0.85468 1.21478 0.95406 0.99068 0.95845 1.21572 0.96635 0.96776 0.99795 1.20962 0.97107 0.95453 0.96544 1.21510 0.97181 0.99742 0.95262 1.21059 0.94299 0.96060 0.98345 1.21493 1.01205 0.95529 0.95345 1.21539 0.99960 0.98057 0.94410 1.20883 0.96064 0.95367 0.96314 1.21891 0.94720 0.98834 1.00851 0.92765 0.91712 0.95117 0.95090 0.92751 0.93391 0.94813 0.92123 0.94125 0.92120 0.93790 0.91174 0.91936 0.89120 0.91092 0.90936 0.91407 0.91850 0.94294 0.94348 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.24 71.98 0.74 -4.90 16 2 C 0.13 5.61 4.40 86.38 0.38 5.99 16 3 N -0.61 -27.33 1.47 -678.03 -1.00 -28.33 16 4 C -0.21 -11.44 6.09 84.03 0.51 -10.92 16 5 H 0.04 2.58 6.66 -2.91 -0.02 2.56 16 6 C -0.01 -0.61 4.66 84.86 0.40 -0.21 16 7 N -0.94 -58.67 13.97 21.65 0.30 -58.37 16 8 Si 0.90 45.38 22.95 68.60 1.57 46.95 16 9 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 10 H -0.32 -16.80 7.11 99.48 0.71 -16.09 16 11 H -0.23 -10.57 4.91 99.48 0.49 -10.08 16 12 C 0.18 6.86 2.61 44.99 0.12 6.97 16 13 C -0.10 -3.14 2.46 -10.80 -0.03 -3.16 16 14 C -0.11 -3.92 5.04 30.59 0.15 -3.76 16 15 C -0.08 -2.84 3.19 -10.80 -0.03 -2.88 16 16 C -0.10 -2.60 5.19 30.59 0.16 -2.44 16 17 C -0.08 -1.89 3.19 -10.78 -0.03 -1.92 16 18 C -0.10 -2.37 5.20 30.61 0.16 -2.21 16 19 C -0.10 -2.81 5.19 30.59 0.16 -2.65 16 20 C -0.07 -2.50 2.20 -10.79 -0.02 -2.53 16 21 C -0.13 -5.07 4.80 30.60 0.15 -4.92 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.03 1.43 4.47 -2.39 -0.01 1.42 16 26 H 0.05 2.04 6.23 -2.39 -0.01 2.03 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.93 6.59 -2.39 -0.02 1.91 16 30 H 0.04 1.70 3.09 -2.39 -0.01 1.69 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.65 7.00 -2.39 -0.02 1.63 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 3.86 4.01 -2.39 -0.01 3.85 16 Total: -1.00 -62.19 282.34 4.44 -57.75 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.76 Total: 11.53 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 2.80 Total: -29.53 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -0.70 Total: -86.70 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.57 Total: 46.95 kcal Total: -62.19 4.44 -57.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216363040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -62.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds