Wall clock time and date at job start Mon Mar 30 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99687 * 2 1 4 4 C 1.50692 * 109.47582 * 66.04762 * 3 2 1 5 5 H 1.08012 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00536 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00375 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 119.99829 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.46878 * 89.99484 * 8 6 4 10 10 H 1.48495 * 109.46864 * 209.99476 * 8 6 4 11 11 H 1.48502 * 109.46844 * 329.99837 * 8 6 4 12 12 C 1.46901 * 110.99825 * 236.04746 * 2 1 3 13 13 C 1.53000 * 109.46769 * 183.95539 * 12 2 1 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 12 16 16 C 1.53006 * 109.47348 * 300.00256 * 15 14 13 17 17 C 1.53002 * 109.46886 * 59.99599 * 16 15 14 18 18 C 1.52993 * 109.47392 * 300.00457 * 17 16 15 19 19 C 1.53008 * 109.47025 * 60.00086 * 17 16 15 20 20 C 1.52996 * 109.47409 * 300.00058 * 19 17 16 21 21 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 22 22 H 1.08996 * 109.47534 * 183.95401 * 1 2 3 23 23 H 1.08998 * 109.47337 * 303.95552 * 1 2 3 24 24 H 1.09007 * 109.47493 * 63.95322 * 1 2 3 25 25 H 1.09005 * 109.46935 * 186.04823 * 3 2 1 26 26 H 1.09005 * 109.47207 * 306.03998 * 3 2 1 27 27 H 0.96997 * 120.00020 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47401 * 63.95246 * 12 2 1 29 29 H 1.09001 * 109.47194 * 299.99524 * 13 12 2 30 30 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 31 31 H 1.09000 * 109.47437 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47312 * 180.02562 * 15 14 13 33 33 H 1.08993 * 109.46765 * 300.00186 * 16 15 14 34 34 H 1.08998 * 109.46884 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46838 * 179.97438 * 17 16 15 36 36 H 1.09000 * 109.47250 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46862 * 299.99865 * 18 17 16 38 38 H 1.09004 * 109.46943 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.46630 * 59.99775 * 19 17 16 40 40 H 1.08996 * 109.47452 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47375 * 180.02562 * 21 15 14 42 42 H 1.09002 * 109.47497 * 59.99850 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3492 1.5288 7 7 1.7143 3.9391 2.6618 8 14 3.0007 4.2759 0.2312 9 1 2.0640 4.9803 -0.6807 10 1 3.8877 5.2669 0.8917 11 1 3.8238 3.3171 -0.5488 12 6 1.9954 -0.7660 -1.1376 13 6 3.5216 -0.8264 -1.0492 14 6 4.0700 -1.6236 -2.2344 15 6 3.5006 -3.0434 -2.2011 16 6 3.9092 -3.7263 -0.8943 17 6 3.3609 -2.9289 0.2909 18 6 3.9302 -1.5092 0.2576 19 6 1.8346 -2.8685 0.2025 20 6 1.4260 -2.1857 -1.1043 21 6 1.9744 -2.9830 -2.2895 22 1 -0.3634 -1.0251 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 1.9888 4.8552 2.8237 28 1 1.7043 -0.2799 -2.0688 29 1 3.9273 0.1851 -1.0733 30 1 3.7789 -1.1371 -3.1654 31 1 5.1573 -1.6671 -2.1712 32 1 3.8916 -3.6115 -3.0452 33 1 4.9965 -3.7692 -0.8313 34 1 3.5032 -4.7375 -0.8704 35 1 3.6516 -3.4157 1.2219 36 1 3.5392 -0.9411 1.1016 37 1 5.0176 -1.5523 0.3206 38 1 1.4439 -2.3008 1.0471 39 1 1.4290 -3.8799 0.2262 40 1 0.3387 -2.1430 -1.1675 41 1 1.5688 -3.9944 -2.2653 42 1 1.6833 -2.4965 -3.2204 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216458683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:15 Heat of formation + Delta-G solvation = -17.327330 kcal Electronic energy + Delta-G solvation = -20088.915568 eV Core-core repulsion = 17453.287284 eV Total energy + Delta-G solvation = -2635.628284 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18818 -36.25218 -32.67967 -32.33197 -32.28705 -30.86443 -27.79365 -25.93872 -25.44633 -23.72697 -21.54116 -21.10225 -20.76282 -19.62046 -17.40406 -16.56182 -15.07129 -14.69566 -14.48497 -14.39134 -14.11753 -13.66894 -13.51522 -13.01050 -12.78561 -12.57571 -12.36389 -12.25976 -12.16389 -12.04487 -11.42695 -11.09742 -10.95618 -10.73191 -10.59950 -10.58552 -10.51380 -10.35809 -10.16695 -9.77221 -9.40245 -9.31007 -9.24325 -9.06798 -8.53298 -7.25126 -6.02511 -3.98626 3.29215 3.37010 3.39120 4.44198 4.64569 4.74661 4.78639 5.07945 5.30294 5.37994 5.40141 5.46686 5.52464 5.55118 5.61251 5.63077 5.70122 5.84237 5.94072 6.02156 6.07540 6.10489 6.11752 6.20010 6.24473 6.26609 6.31200 6.34783 6.35712 6.39701 6.71849 6.76706 6.80458 6.82252 6.83573 6.95239 7.01910 7.10077 7.67380 7.99753 8.15387 8.71314 9.06755 9.60173 11.10764 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.007326 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.295533 B = 3820.959170 C = 4035.025637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.520 5.520 3 C 0.158 3.842 4 C -0.504 4.504 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.873 3.127 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.095 3.905 13 C -0.080 4.080 14 C -0.108 4.108 15 C -0.084 4.084 16 C -0.106 4.106 17 C -0.081 4.081 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.079 4.079 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.033 0.967 26 H -0.021 1.021 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -14.448 -9.482 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.243 5.243 3 C 0.032 3.968 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.700 3.300 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.014 4.014 13 C -0.099 4.099 14 C -0.146 4.146 15 C -0.102 4.102 16 C -0.144 4.144 17 C -0.099 4.099 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.144 4.144 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.026 0.974 25 H 0.051 0.949 26 H -0.004 1.004 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.101 -14.493 -8.942 17.310 hybrid contribution 0.225 1.153 -1.476 1.886 sum 3.326 -13.341 -10.418 17.250 Atomic orbital electron populations 1.22292 0.88711 0.99940 1.00543 1.61959 1.06777 1.15806 1.39798 1.20248 0.95585 0.84271 0.96680 1.21051 1.35165 0.97100 1.00942 0.90163 1.24889 0.95838 0.97395 0.95222 1.69895 1.47104 1.13200 1.23937 0.86900 0.80693 0.80109 0.82276 1.20491 1.21216 1.19190 1.21501 0.94313 0.93267 0.92295 1.21098 0.94853 0.99085 0.94851 1.21559 0.99622 0.95159 0.98213 1.21025 0.95597 0.96264 0.97349 1.21543 0.99853 0.98132 0.94835 1.20982 0.95752 0.96165 0.97049 1.21400 0.98545 0.95110 0.98585 1.21396 0.95128 0.98820 0.98144 1.21105 0.99162 0.94524 0.95029 1.21535 0.95224 0.99612 0.98037 0.93064 0.90344 0.97418 0.94886 1.00357 0.92760 0.95775 0.91002 0.92617 0.92231 0.92056 0.92552 0.92676 0.91933 0.89587 0.93424 0.90263 0.93500 0.91537 0.92327 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.92 60.06 0.54 1.18 16 2 N -0.52 -10.67 3.09 -236.33 -0.73 -11.40 16 3 C 0.16 3.83 3.60 -4.98 -0.02 3.81 16 4 C -0.50 -14.26 9.01 -34.45 -0.31 -14.57 16 5 H 0.08 2.46 7.37 -52.48 -0.39 2.08 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 8 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.10 1.65 1.54 -67.71 -0.10 1.54 16 13 C -0.08 -1.32 2.38 -90.62 -0.22 -1.54 16 14 C -0.11 -1.45 5.19 -26.73 -0.14 -1.59 16 15 C -0.08 -1.01 3.19 -90.62 -0.29 -1.30 16 16 C -0.11 -1.26 5.19 -26.73 -0.14 -1.40 16 17 C -0.08 -1.12 3.19 -90.62 -0.29 -1.41 16 18 C -0.10 -1.59 5.04 -26.74 -0.13 -1.73 16 19 C -0.10 -1.40 5.03 -26.73 -0.13 -1.53 16 20 C -0.08 -1.15 2.22 -90.62 -0.20 -1.36 16 21 C -0.11 -1.31 5.19 -26.73 -0.14 -1.45 16 22 H 0.05 0.85 6.23 -51.93 -0.32 0.52 16 23 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.03 0.81 4.89 -51.93 -0.25 0.56 16 26 H -0.02 -0.53 7.55 -51.93 -0.39 -0.92 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.33 6.20 -51.93 -0.32 1.01 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.65 7.60 -51.93 -0.39 1.25 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.31 7.61 -51.93 -0.39 0.91 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.96 6.35 -51.93 -0.33 0.64 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -29.24 297.02 -9.21 -38.45 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.39 Total: -2.18 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.68 Total: -19.46 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.04 Total: -38.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.24 -9.21 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216458683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.126 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds