Wall clock time and date at job start Mon Mar 30 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99687 * 2 1 4 4 C 1.50692 * 109.47582 * 66.04762 * 3 2 1 5 5 H 1.08012 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00536 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00375 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 119.99829 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.46878 * 89.99484 * 8 6 4 10 10 H 1.48495 * 109.46864 * 209.99476 * 8 6 4 11 11 H 1.48502 * 109.46844 * 329.99837 * 8 6 4 12 12 C 1.46901 * 110.99825 * 236.04746 * 2 1 3 13 13 C 1.53000 * 109.46769 * 183.95539 * 12 2 1 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 12 16 16 C 1.53006 * 109.47348 * 300.00256 * 15 14 13 17 17 C 1.53002 * 109.46886 * 59.99599 * 16 15 14 18 18 C 1.52993 * 109.47392 * 300.00457 * 17 16 15 19 19 C 1.53008 * 109.47025 * 60.00086 * 17 16 15 20 20 C 1.52996 * 109.47409 * 300.00058 * 19 17 16 21 21 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 22 22 H 1.08996 * 109.47534 * 183.95401 * 1 2 3 23 23 H 1.08998 * 109.47337 * 303.95552 * 1 2 3 24 24 H 1.09007 * 109.47493 * 63.95322 * 1 2 3 25 25 H 1.09005 * 109.46935 * 186.04823 * 3 2 1 26 26 H 1.09005 * 109.47207 * 306.03998 * 3 2 1 27 27 H 0.96997 * 120.00020 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47401 * 63.95246 * 12 2 1 29 29 H 1.09001 * 109.47194 * 299.99524 * 13 12 2 30 30 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 31 31 H 1.09000 * 109.47437 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47312 * 180.02562 * 15 14 13 33 33 H 1.08993 * 109.46765 * 300.00186 * 16 15 14 34 34 H 1.08998 * 109.46884 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46838 * 179.97438 * 17 16 15 36 36 H 1.09000 * 109.47250 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46862 * 299.99865 * 18 17 16 38 38 H 1.09004 * 109.46943 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.46630 * 59.99775 * 19 17 16 40 40 H 1.08996 * 109.47452 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47375 * 180.02562 * 21 15 14 42 42 H 1.09002 * 109.47497 * 59.99850 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3492 1.5288 7 7 1.7143 3.9391 2.6618 8 14 3.0007 4.2759 0.2312 9 1 2.0640 4.9803 -0.6807 10 1 3.8877 5.2669 0.8917 11 1 3.8238 3.3171 -0.5488 12 6 1.9954 -0.7660 -1.1376 13 6 3.5216 -0.8264 -1.0492 14 6 4.0700 -1.6236 -2.2344 15 6 3.5006 -3.0434 -2.2011 16 6 3.9092 -3.7263 -0.8943 17 6 3.3609 -2.9289 0.2909 18 6 3.9302 -1.5092 0.2576 19 6 1.8346 -2.8685 0.2025 20 6 1.4260 -2.1857 -1.1043 21 6 1.9744 -2.9830 -2.2895 22 1 -0.3634 -1.0251 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 1.9888 4.8552 2.8237 28 1 1.7043 -0.2799 -2.0688 29 1 3.9273 0.1851 -1.0733 30 1 3.7789 -1.1371 -3.1654 31 1 5.1573 -1.6671 -2.1712 32 1 3.8916 -3.6115 -3.0452 33 1 4.9965 -3.7692 -0.8313 34 1 3.5032 -4.7375 -0.8704 35 1 3.6516 -3.4157 1.2219 36 1 3.5392 -0.9411 1.1016 37 1 5.0176 -1.5523 0.3206 38 1 1.4439 -2.3008 1.0471 39 1 1.4290 -3.8799 0.2262 40 1 0.3387 -2.1430 -1.1675 41 1 1.5688 -3.9944 -2.2653 42 1 1.6833 -2.4965 -3.2204 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216458683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:14 Heat of formation + Delta-G solvation = -33.811952 kcal Electronic energy + Delta-G solvation = -20089.630395 eV Core-core repulsion = 17453.287284 eV Total energy + Delta-G solvation = -2636.343111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36656 -37.83834 -34.71465 -33.62541 -33.35977 -32.24093 -29.72689 -27.34413 -26.59083 -25.32548 -23.08828 -22.19477 -22.01910 -21.08211 -19.17515 -18.15867 -16.61503 -16.36702 -15.96622 -15.80752 -15.37477 -15.11771 -14.68241 -14.48113 -14.17648 -14.12225 -13.70330 -13.62044 -13.49538 -13.33072 -13.08803 -12.78397 -12.58287 -12.29613 -11.93792 -11.81731 -11.77544 -11.67301 -11.59796 -11.47315 -11.30146 -10.81330 -10.50194 -10.43209 -10.33914 -8.92552 -8.29784 -6.31437 1.29489 1.31248 1.42168 2.31404 3.02920 3.22788 3.62481 3.70215 3.89232 4.27269 4.29041 4.35054 4.37291 4.44056 4.44227 4.52177 4.56029 4.57296 4.64234 4.73114 4.84734 4.89161 4.95093 4.97569 4.98949 5.05907 5.16230 5.18071 5.20744 5.25063 5.26763 5.28096 5.31617 5.53189 5.54586 5.66453 5.66807 5.69451 5.81011 6.04054 6.43769 6.70984 6.75195 7.31770 8.86959 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.007326 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.295533 B = 3820.959170 C = 4035.025637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.173 3.827 4 C -0.509 4.509 5 H 0.039 0.961 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.253 1.253 12 C 0.093 3.907 13 C -0.083 4.083 14 C -0.103 4.103 15 C -0.082 4.082 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.097 4.097 19 C -0.096 4.096 20 C -0.077 4.077 21 C -0.102 4.102 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.012 0.988 25 H 0.032 0.968 26 H -0.027 1.027 27 H 0.266 0.734 28 H 0.017 0.983 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -16.739 -12.231 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.254 5.254 3 C 0.045 3.955 4 C -0.548 4.548 5 H 0.057 0.943 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.765 3.235 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.177 1.177 12 C -0.016 4.016 13 C -0.102 4.102 14 C -0.141 4.141 15 C -0.100 4.100 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.140 4.140 22 H 0.099 0.901 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.050 0.950 26 H -0.009 1.009 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.198 -16.807 -11.701 20.905 hybrid contribution -0.177 1.840 -0.516 1.919 sum 4.021 -14.967 -12.217 19.734 Atomic orbital electron populations 1.22221 0.88156 1.01252 0.99241 1.61879 1.07407 1.13868 1.42204 1.19944 0.95457 0.86089 0.93973 1.21263 1.34381 0.97365 1.01774 0.94312 1.25784 0.97037 0.98436 0.97534 1.70044 1.48753 1.13833 1.26233 0.85800 0.79394 0.78830 0.79466 1.19494 1.20417 1.17654 1.21658 0.95112 0.94501 0.90282 1.21107 0.94189 0.98259 0.96660 1.21542 1.00259 0.95856 0.96469 1.21068 0.95253 0.95228 0.98438 1.21518 1.00475 0.98512 0.93263 1.20984 0.95311 0.94800 0.98775 1.21335 0.99026 0.96342 0.96797 1.21370 0.95611 0.99563 0.96834 1.21114 0.99175 0.92778 0.96502 1.21534 0.95475 1.00290 0.96669 0.90107 0.93581 0.96970 0.95004 1.00941 0.92489 0.96477 0.93987 0.92215 0.91137 0.89298 0.91596 0.90606 0.91521 0.93959 0.92533 0.93470 0.91056 0.91495 0.90040 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 8.92 127.69 1.14 2.70 16 2 N -0.53 -22.38 3.09 -901.61 -2.79 -25.17 16 3 C 0.17 8.60 3.60 85.55 0.31 8.91 16 4 C -0.51 -30.26 9.01 25.60 0.23 -30.03 16 5 H 0.04 2.56 7.37 -2.90 -0.02 2.54 16 6 C 0.01 0.55 5.47 84.65 0.46 1.01 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 8 Si 0.94 45.51 27.47 68.60 1.88 47.40 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 12 C 0.09 3.15 1.54 44.92 0.07 3.22 16 13 C -0.08 -2.68 2.38 -10.79 -0.03 -2.71 16 14 C -0.10 -2.47 5.19 30.60 0.16 -2.31 16 15 C -0.08 -1.59 3.19 -10.79 -0.03 -1.62 16 16 C -0.10 -1.95 5.19 30.60 0.16 -1.79 16 17 C -0.08 -2.06 3.19 -10.79 -0.03 -2.09 16 18 C -0.10 -3.11 5.04 30.59 0.15 -2.96 16 19 C -0.10 -2.59 5.03 30.60 0.15 -2.43 16 20 C -0.08 -2.06 2.22 -10.79 -0.02 -2.09 16 21 C -0.10 -2.07 5.19 30.60 0.16 -1.91 16 22 H 0.08 2.67 6.23 -2.39 -0.01 2.66 16 23 H 0.05 2.09 6.76 -2.39 -0.02 2.07 16 24 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.03 1.60 4.89 -2.38 -0.01 1.59 16 26 H -0.03 -1.36 7.55 -2.38 -0.02 -1.38 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.04 1.57 6.20 -2.39 -0.01 1.56 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.69 7.60 -2.39 -0.02 1.68 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.56 7.61 -2.39 -0.02 1.54 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.78 6.35 -2.39 -0.02 1.76 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.24 297.02 3.18 -63.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.91 Total: 8.92 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 2.88 Total: -34.10 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.49 Total: -85.28 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -66.24 3.18 -63.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216458683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.248 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds