Wall clock time and date at job start Mon Mar 30 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99870 * 2 1 4 4 H 1.09005 * 109.46788 * 350.97069 * 3 2 1 5 5 C 1.50703 * 109.47173 * 230.96909 * 3 2 1 6 6 H 1.07996 * 120.00023 * 239.99937 * 5 3 2 7 7 C 1.37875 * 119.99796 * 59.99912 * 5 3 2 8 8 N 1.31511 * 120.00281 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99830 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47129 * 89.99868 * 9 7 5 11 11 H 1.48502 * 109.47190 * 209.99723 * 9 7 5 12 12 H 1.48497 * 109.47121 * 330.00010 * 9 7 5 13 13 C 1.53002 * 109.47307 * 110.96870 * 3 2 1 14 14 C 1.53001 * 109.47049 * 62.62595 * 13 3 2 15 15 C 1.52998 * 109.46804 * 180.02562 * 14 13 3 16 16 C 1.52997 * 109.47086 * 299.99512 * 15 14 13 17 17 C 1.53001 * 109.46901 * 60.00547 * 16 15 14 18 18 C 1.53003 * 109.47168 * 59.99551 * 17 16 15 19 19 C 1.52994 * 109.47324 * 300.00292 * 18 17 16 20 20 C 1.52995 * 109.47427 * 60.00182 * 15 14 13 21 21 C 1.53002 * 109.47101 * 299.99782 * 19 18 17 22 22 C 1.52994 * 109.47101 * 182.62678 * 13 3 2 23 23 H 1.09006 * 109.46663 * 184.54988 * 1 2 3 24 24 H 1.09008 * 109.47102 * 304.54508 * 1 2 3 25 25 H 1.08993 * 109.47650 * 64.55008 * 1 2 3 26 26 H 1.00904 * 111.00360 * 123.95174 * 2 1 3 27 27 H 0.97005 * 120.00453 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.46963 * 300.00117 * 14 13 3 29 29 H 1.08993 * 109.47031 * 59.99764 * 14 13 3 30 30 H 1.08998 * 109.46642 * 180.02562 * 15 14 13 31 31 H 1.09003 * 109.47661 * 300.00675 * 16 15 14 32 32 H 1.08995 * 109.47409 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.47435 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47218 * 179.97438 * 18 17 16 35 35 H 1.09008 * 109.46673 * 60.00572 * 18 17 16 36 36 H 1.09000 * 109.46977 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47378 * 179.97438 * 20 15 14 38 38 H 1.09001 * 109.47323 * 59.99551 * 20 15 14 39 39 H 1.09005 * 109.46820 * 300.00161 * 21 19 18 40 40 H 1.08998 * 109.47217 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.47409 * 300.00109 * 22 13 3 42 42 H 1.09005 * 109.47415 * 60.00203 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.1780 2.0744 -0.1613 5 6 3.0108 1.5199 -1.1037 6 1 4.0283 1.7943 -0.8680 7 6 2.6406 1.3051 -2.4144 8 7 1.4013 0.9714 -2.7014 9 14 3.8989 1.4897 -3.7825 10 1 4.5687 0.1854 -4.0183 11 1 3.2168 1.9280 -5.0267 12 1 4.9117 2.5024 -3.3902 13 6 2.6601 1.6627 1.3470 14 6 3.8482 0.7190 1.5440 15 6 4.5124 1.0098 2.8912 16 6 5.0027 2.4589 2.9159 17 6 3.8147 3.4026 2.7188 18 6 2.8007 3.1879 3.8443 19 6 2.3105 1.7388 3.8197 20 6 3.4986 0.7951 4.0167 21 6 1.6461 1.4480 2.4725 22 6 3.1504 3.1118 1.3710 23 1 -0.3633 -1.0245 0.0815 24 1 -0.3634 0.5828 0.8465 25 1 -0.3634 0.4416 -0.9278 26 1 1.8307 -0.5261 0.7814 27 1 1.1409 0.8199 -3.6235 28 1 3.4989 -0.3134 1.5268 29 1 4.5703 0.8715 0.7419 30 1 5.3591 0.3378 3.0314 31 1 5.7251 2.6118 2.1140 32 1 5.4764 2.6660 3.8754 33 1 4.1638 4.4350 2.7368 34 1 1.9544 3.8606 3.7042 35 1 3.2740 3.3952 4.8042 36 1 1.5885 1.5858 4.6218 37 1 3.9719 1.0018 4.9765 38 1 3.1493 -0.2373 3.9991 39 1 0.7997 2.1204 2.3321 40 1 1.2973 0.4155 2.4547 41 1 3.8725 3.2644 0.5690 42 1 2.3040 3.7841 1.2307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216783950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:39 Heat of formation + Delta-G solvation = -24.978687 kcal Electronic energy + Delta-G solvation = -20394.900158 eV Core-core repulsion = 17758.940086 eV Total energy + Delta-G solvation = -2635.960072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01379 -35.74812 -32.34137 -32.12910 -31.77298 -31.21230 -26.74284 -25.39823 -25.28124 -23.65935 -21.95904 -20.95513 -20.76632 -18.99061 -17.13546 -16.10149 -14.81374 -14.24042 -14.09080 -13.89241 -13.86593 -13.46902 -13.15697 -13.00987 -12.82149 -12.40150 -12.17154 -11.97249 -11.80923 -11.64694 -10.93668 -10.82072 -10.68857 -10.55885 -10.37617 -10.35488 -10.33206 -10.21066 -10.08753 -9.79902 -9.43350 -9.03833 -8.80908 -8.58459 -8.23770 -6.58321 -5.75599 -3.82075 3.41082 3.47728 3.49694 4.58906 4.94648 4.97137 5.01084 5.41953 5.55896 5.59763 5.67836 5.71430 5.73653 5.76894 5.89658 5.90562 5.93819 6.08006 6.20265 6.25052 6.27310 6.32827 6.34039 6.36203 6.50962 6.54414 6.56214 6.60455 6.64184 6.69224 6.75468 6.94117 7.03611 7.13747 7.24774 7.28944 7.30630 7.51157 8.10651 8.49769 8.81230 8.91434 9.34820 9.83641 11.31526 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.008925 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.586604 B = 3136.490976 C = 3638.805731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.658 5.658 3 C 0.231 3.769 4 H 0.021 0.979 5 C -0.505 4.505 6 H 0.054 0.946 7 C 0.081 3.919 8 N -0.865 5.865 9 Si 0.878 3.122 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.065 4.065 14 C -0.089 4.089 15 C -0.090 4.090 16 C -0.103 4.103 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.103 4.103 21 C -0.105 4.105 22 C -0.089 4.089 23 H 0.030 0.970 24 H -0.013 1.013 25 H 0.075 0.925 26 H 0.301 0.699 27 H 0.252 0.748 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 1.883 12.276 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.288 5.288 3 C 0.124 3.876 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.072 0.928 7 C -0.123 4.123 8 N -0.502 5.502 9 Si 0.707 3.293 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.067 4.067 14 C -0.127 4.127 15 C -0.108 4.108 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.141 4.141 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.127 4.127 23 H 0.049 0.951 24 H 0.006 0.994 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.615 1.769 11.432 11.859 hybrid contribution 0.369 0.254 0.091 0.458 sum 2.985 2.023 11.523 12.074 Atomic orbital electron populations 1.22137 0.91096 0.97819 0.99704 1.60967 1.04659 1.16968 1.46213 1.19199 0.93806 0.85752 0.88864 0.96129 1.21024 0.95841 1.46890 0.90628 0.92751 1.24875 0.94564 0.94608 0.98270 1.69969 1.16499 1.46012 1.17765 0.86860 0.82073 0.78063 0.82325 1.20993 1.21725 1.20273 1.21006 0.94638 0.94606 0.96411 1.21452 0.97719 0.98626 0.94878 1.21135 0.97185 0.96085 0.96424 1.21477 0.97136 0.95051 1.00352 1.21122 0.95362 0.98004 0.96216 1.21496 0.98512 0.96273 0.97809 1.21031 0.96594 0.95019 0.97621 1.21494 0.96110 0.98821 0.97652 1.21655 0.97965 1.00430 0.94174 1.21430 0.99883 0.96220 0.95149 0.95113 0.99428 0.90620 0.88168 0.93824 0.92660 0.90836 0.92318 0.92196 0.93269 0.92325 0.92587 0.93070 0.92531 0.93097 0.92530 0.93005 0.92823 0.90915 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.94 9.89 60.06 0.59 1.53 16 2 N -0.66 -15.33 5.68 -115.24 -0.65 -15.98 16 3 C 0.23 5.46 1.35 -68.86 -0.09 5.37 16 4 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 5 C -0.50 -13.30 7.31 -34.44 -0.25 -13.55 16 6 H 0.05 1.42 5.68 -52.49 -0.30 1.12 16 7 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 8 N -0.87 -24.78 11.87 55.43 0.66 -24.12 16 9 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C -0.07 -1.24 0.27 -154.51 -0.04 -1.29 16 14 C -0.09 -1.63 4.02 -26.73 -0.11 -1.74 16 15 C -0.09 -1.36 3.19 -90.62 -0.29 -1.65 16 16 C -0.10 -1.49 5.19 -26.73 -0.14 -1.63 16 17 C -0.09 -1.34 3.20 -90.59 -0.29 -1.63 16 18 C -0.10 -1.45 5.19 -26.73 -0.14 -1.58 16 19 C -0.08 -1.22 3.19 -90.62 -0.29 -1.51 16 20 C -0.10 -1.44 5.19 -26.73 -0.14 -1.58 16 21 C -0.10 -1.79 3.52 -26.73 -0.09 -1.89 16 22 C -0.09 -1.63 4.26 -26.71 -0.11 -1.74 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H -0.01 -0.26 7.30 -51.92 -0.38 -0.64 16 25 H 0.08 1.86 7.35 -51.93 -0.38 1.48 16 26 H 0.30 6.44 5.42 -39.29 -0.21 6.22 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.03 6.52 -51.93 -0.34 0.70 16 29 H 0.07 1.50 6.46 -51.93 -0.34 1.16 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.94 6.45 -51.93 -0.33 0.60 16 41 H 0.07 1.46 6.79 -51.93 -0.35 1.11 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -27.50 295.12 -9.29 -36.80 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.23 Total: 3.20 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -1.49 Total: -20.75 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.00 Total: -40.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.50 -9.29 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216783950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.817 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds