Wall clock time and date at job start Mon Mar 30 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99728 * 2 1 4 4 H 1.09007 * 109.46730 * 183.36264 * 3 2 1 5 5 C 1.50706 * 109.47159 * 303.35928 * 3 2 1 6 6 H 1.07995 * 119.99764 * 119.99734 * 5 3 2 7 7 C 1.37879 * 119.99517 * 300.00537 * 5 3 2 8 8 N 1.31503 * 120.00547 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99554 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46749 * 59.99696 * 9 7 5 11 11 H 1.48493 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46872 * 300.00199 * 9 7 5 13 13 C 1.52998 * 109.47475 * 63.35965 * 3 2 1 14 14 C 1.52997 * 109.47123 * 177.38548 * 13 3 2 15 15 C 1.52998 * 109.47123 * 180.02562 * 14 13 3 16 16 C 1.52998 * 109.46965 * 60.00243 * 15 14 13 17 17 C 1.52998 * 109.47038 * 60.00427 * 16 15 14 18 18 C 1.53011 * 109.46834 * 299.99402 * 17 16 15 19 19 C 1.52993 * 109.47411 * 300.00206 * 14 13 3 20 20 C 1.53000 * 109.47159 * 300.00349 * 18 17 16 21 21 C 1.52998 * 109.46965 * 57.38791 * 13 3 2 22 22 C 1.53000 * 109.47348 * 299.99837 * 16 15 14 23 23 H 1.09007 * 109.47153 * 184.67352 * 1 2 3 24 24 H 1.08998 * 109.47675 * 304.67412 * 1 2 3 25 25 H 1.08998 * 109.46978 * 64.67664 * 1 2 3 26 26 H 1.00899 * 110.99610 * 123.94918 * 2 1 3 27 27 H 0.97003 * 120.00343 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47107 * 297.38905 * 13 3 2 29 29 H 1.09005 * 109.47157 * 60.00248 * 14 13 3 30 30 H 1.09000 * 109.47153 * 180.02562 * 15 14 13 31 31 H 1.09002 * 109.47426 * 300.00354 * 15 14 13 32 32 H 1.09009 * 109.47302 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.47393 * 180.02562 * 17 16 15 34 34 H 1.08991 * 109.47367 * 59.99561 * 17 16 15 35 35 H 1.08999 * 109.46695 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.47114 * 60.00272 * 19 14 13 37 37 H 1.09000 * 109.47183 * 179.97438 * 19 14 13 38 38 H 1.08996 * 109.46951 * 299.99799 * 20 18 17 39 39 H 1.08996 * 109.46733 * 179.97438 * 20 18 17 40 40 H 1.09000 * 109.47200 * 299.99989 * 21 13 3 41 41 H 1.08994 * 109.47243 * 300.00203 * 22 16 15 42 42 H 1.08996 * 109.46951 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0834 1.3430 -0.0603 5 6 1.4460 2.1204 -1.1868 6 1 0.8555 3.0120 -1.0363 7 6 1.6971 1.6671 -2.4645 8 7 2.4164 0.5815 -2.6476 9 14 1.0155 2.5950 -3.9355 10 1 1.5471 3.9816 -3.9356 11 1 1.4237 1.9076 -5.1868 12 1 -0.4668 2.6333 -3.8531 13 6 1.5744 2.0794 1.2893 14 6 2.1768 3.4854 1.3192 15 6 1.7563 4.1932 2.6088 16 6 2.2593 3.3971 3.8147 17 6 3.7852 3.2996 3.7608 18 6 4.2057 2.5917 2.4711 19 6 3.7027 3.3878 1.2659 20 6 3.6033 1.1856 2.4413 21 6 2.0768 1.2836 2.4955 22 6 1.6568 1.9910 3.7849 23 1 -0.3634 -1.0243 0.0837 24 1 -0.3634 0.5846 0.8451 25 1 -0.3633 0.4396 -0.9289 26 1 1.8306 -0.5261 0.7814 27 1 2.5928 0.2624 -3.5465 28 1 0.4873 2.1490 1.3272 29 1 1.8188 4.0525 0.4598 30 1 2.1851 5.1950 2.6299 31 1 0.6692 4.2628 2.6472 32 1 1.9601 3.9016 4.7335 33 1 4.1436 2.7320 4.6197 34 1 4.2143 4.3012 3.7821 35 1 5.2928 2.5226 2.4326 36 1 4.0027 2.8834 0.3473 37 1 4.1318 4.3895 1.2868 38 1 3.9617 0.6186 3.3004 39 1 3.9025 0.6816 1.5224 40 1 1.6477 0.2818 2.4743 41 1 0.5698 2.0606 3.8233 42 1 2.0148 1.4241 4.6442 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216784021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:42 Heat of formation + Delta-G solvation = -24.436266 kcal Electronic energy + Delta-G solvation = -20449.702257 eV Core-core repulsion = 17813.765707 eV Total energy + Delta-G solvation = -2635.936551 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04546 -35.75573 -32.28425 -32.16179 -31.81665 -31.14354 -27.10884 -25.37805 -24.74875 -24.13982 -21.55696 -20.90560 -20.71783 -19.22366 -16.77256 -16.04454 -14.93081 -14.51475 -14.46787 -14.00232 -13.81476 -13.56608 -13.16753 -12.78900 -12.74609 -12.30040 -12.12881 -11.95564 -11.83657 -11.60896 -11.13737 -10.96216 -10.72666 -10.49915 -10.42618 -10.36668 -10.26698 -10.23969 -9.93847 -9.62262 -9.24732 -9.01150 -8.92507 -8.57452 -8.25246 -6.61578 -5.77630 -3.88301 3.37889 3.43353 3.45771 4.54233 4.96485 4.99543 5.01613 5.43343 5.58808 5.62401 5.70290 5.73614 5.76182 5.81584 5.85950 5.90349 5.95679 6.05744 6.14203 6.24721 6.32298 6.36130 6.37669 6.43966 6.47438 6.55218 6.57623 6.59850 6.63113 6.72492 6.82161 6.93165 7.04096 7.12184 7.20486 7.27966 7.30668 7.83488 7.98668 8.32459 8.73541 9.00524 9.32302 9.77440 11.26863 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.008528 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.319332 B = 3282.451351 C = 3542.152674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.658 5.658 3 C 0.225 3.775 4 H 0.047 0.953 5 C -0.525 4.525 6 H 0.050 0.950 7 C 0.082 3.918 8 N -0.849 5.849 9 Si 0.873 3.127 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.280 1.280 13 C -0.101 4.101 14 C -0.066 4.066 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.104 4.104 18 C -0.083 4.083 19 C -0.106 4.106 20 C -0.107 4.107 21 C -0.083 4.083 22 C -0.104 4.104 23 H 0.027 0.973 24 H -0.003 1.003 25 H 0.067 0.933 26 H 0.296 0.704 27 H 0.253 0.747 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 3.504 11.636 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.285 5.285 3 C 0.118 3.882 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.123 4.123 8 N -0.484 5.484 9 Si 0.701 3.299 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.206 1.206 13 C -0.122 4.122 14 C -0.085 4.085 15 C -0.147 4.147 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.102 4.102 22 C -0.142 4.142 23 H 0.046 0.954 24 H 0.015 0.985 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.294 3.276 10.791 11.352 hybrid contribution -0.730 0.774 0.069 1.066 sum 0.564 4.050 10.860 11.604 Atomic orbital electron populations 1.21860 0.90891 0.97156 1.00007 1.60842 1.05372 1.16843 1.45479 1.19280 0.96034 0.83772 0.89157 0.93513 1.20869 1.34917 1.10196 0.90393 0.93207 1.24913 0.94824 0.94378 0.98231 1.70077 1.36729 1.20965 1.20631 0.87009 0.79530 0.80225 0.83152 1.20507 1.21530 1.20594 1.21846 0.98822 0.94784 0.96722 1.20874 0.94951 0.96616 0.96052 1.21606 0.99733 0.97901 0.95478 1.21001 0.95372 0.96103 0.97634 1.21511 0.95446 0.99700 0.97473 1.21000 0.98544 0.95546 0.95036 1.21508 0.95926 0.98672 0.98197 1.21541 0.95346 0.96093 1.01422 1.21093 0.95513 0.98531 0.95047 1.21496 0.99484 0.95598 0.97597 0.95397 0.98518 0.91461 0.88837 0.93655 0.92746 0.90554 0.93024 0.92876 0.92578 0.92926 0.92737 0.92278 0.90368 0.93547 0.93460 0.90897 0.92304 0.92836 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 10.05 60.07 0.60 1.72 16 2 N -0.66 -15.27 6.02 -115.24 -0.69 -15.97 16 3 C 0.22 5.23 1.33 -68.86 -0.09 5.14 16 4 H 0.05 1.20 4.81 -51.93 -0.25 0.95 16 5 C -0.52 -13.78 6.43 -34.44 -0.22 -14.00 16 6 H 0.05 1.32 6.89 -52.49 -0.36 0.96 16 7 C 0.08 2.25 5.35 -17.82 -0.10 2.16 16 8 N -0.85 -24.36 12.77 55.43 0.71 -23.65 16 9 Si 0.87 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.10 -1.97 1.12 -90.62 -0.10 -2.07 16 14 C -0.07 -1.20 2.50 -90.63 -0.23 -1.43 16 15 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 16 C -0.08 -1.17 3.19 -90.62 -0.29 -1.46 16 17 C -0.10 -1.42 5.19 -26.73 -0.14 -1.56 16 18 C -0.08 -1.28 3.19 -90.64 -0.29 -1.57 16 19 C -0.11 -1.85 4.91 -26.76 -0.13 -1.98 16 20 C -0.11 -1.74 4.92 -26.70 -0.13 -1.87 16 21 C -0.08 -1.40 2.32 -90.62 -0.21 -1.61 16 22 C -0.10 -1.54 5.19 -26.76 -0.14 -1.67 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.00 -0.07 6.22 -51.93 -0.32 -0.39 16 25 H 0.07 1.64 7.15 -51.93 -0.37 1.27 16 26 H 0.30 6.27 6.98 -39.29 -0.27 5.99 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.15 6.51 -51.93 -0.34 0.81 16 29 H 0.08 1.56 6.79 -51.93 -0.35 1.21 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.58 6.37 -51.93 -0.33 1.25 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.34 6.48 -51.93 -0.34 1.00 16 40 H 0.06 1.02 6.64 -51.93 -0.35 0.67 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -27.42 293.28 -9.26 -36.68 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.07 Total: 4.37 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.60 Total: -22.03 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.01 Total: -39.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.42 -9.26 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216784021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.241 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds