Wall clock time and date at job start Mon Mar 30 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46994 * 119.99585 * 2 1 3 5 5 H 1.07999 * 119.99816 * 120.00055 * 4 2 1 6 6 C 1.37871 * 119.99987 * 300.00196 * 4 2 1 7 7 N 1.31514 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46685 * 89.99965 * 8 6 4 10 10 H 1.48494 * 109.47357 * 210.00044 * 8 6 4 11 11 H 1.48494 * 109.47227 * 330.00562 * 8 6 4 12 12 C 1.53002 * 109.47454 * 239.99934 * 2 1 3 13 13 C 1.52996 * 109.46969 * 59.99949 * 12 2 1 14 14 C 1.53002 * 109.46972 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.47233 * 59.99538 * 14 13 12 16 16 C 1.52996 * 109.47328 * 300.00469 * 15 14 13 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 19 19 C 1.52997 * 109.46817 * 299.99733 * 14 13 12 20 20 C 1.53001 * 109.46963 * 180.02562 * 12 2 1 21 21 C 1.52993 * 109.47473 * 60.00001 * 16 15 14 22 22 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47056 * 300.00052 * 1 2 3 24 24 H 1.09002 * 109.46838 * 60.00672 * 1 2 3 25 25 H 1.00905 * 111.00319 * 56.04489 * 3 2 1 26 26 H 1.00900 * 111.00464 * 179.97438 * 3 2 1 27 27 H 0.97005 * 120.00032 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47452 * 59.99938 * 13 12 2 29 29 H 1.09000 * 109.47054 * 300.00097 * 13 12 2 30 30 H 1.09002 * 109.47070 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.46724 * 60.00652 * 15 14 13 32 32 H 1.09001 * 109.47194 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.47108 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 35 35 H 1.09002 * 109.47097 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47533 * 179.97438 * 19 14 13 38 38 H 1.08996 * 109.47853 * 300.00202 * 19 14 13 39 39 H 1.08996 * 109.46778 * 299.99646 * 20 12 2 40 40 H 1.08992 * 109.47514 * 59.99933 * 20 12 2 41 41 H 1.09002 * 109.47722 * 180.02562 * 21 16 15 42 42 H 1.09004 * 109.46998 * 59.99561 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0401 -0.7213 -1.2492 13 6 1.5301 0.0000 -2.4984 14 6 2.0397 -0.7217 -3.7477 15 6 1.5293 -2.1640 -3.7473 16 6 2.0393 -2.8852 -2.4980 17 6 3.5693 -2.8857 -2.4983 18 6 4.0797 -1.4433 -2.4986 19 6 3.5697 -0.7221 -3.7479 20 6 3.5701 -0.7218 -1.2488 21 6 1.5297 -2.1637 -1.2489 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6441 1.9013 0.7814 26 1 3.0283 1.4120 0.0004 27 1 0.7080 1.1610 3.4844 28 1 1.8934 1.0276 -2.4985 29 1 0.4401 -0.0001 -2.4985 30 1 1.6760 -0.2081 -4.6377 31 1 0.4393 -2.1637 -3.7472 32 1 1.8920 -2.6780 -4.6375 33 1 1.6753 -3.9127 -2.4976 34 1 3.9323 -3.3998 -3.3883 35 1 3.9326 -3.3998 -1.6085 36 1 5.1697 -1.4436 -2.4983 37 1 3.9328 -1.2365 -4.6376 38 1 3.9334 0.3054 -3.7481 39 1 3.9337 0.3058 -1.2486 40 1 3.9331 -1.2358 -0.3589 41 1 1.8933 -2.6772 -0.3588 42 1 0.4396 -2.1633 -1.2488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217144414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:06 Heat of formation + Delta-G solvation = -33.909528 kcal Electronic energy + Delta-G solvation = -20619.452000 eV Core-core repulsion = 17983.104658 eV Total energy + Delta-G solvation = -2636.347342 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92069 -35.92670 -32.13761 -32.08358 -31.93845 -29.67439 -27.25516 -25.80929 -25.02097 -24.59246 -21.61968 -20.80120 -20.66958 -18.24130 -16.99076 -16.04862 -14.87816 -14.17897 -13.93575 -13.81837 -13.72732 -13.38605 -13.13136 -12.84278 -12.70850 -12.39888 -11.99210 -11.86672 -11.57025 -11.21999 -11.02204 -10.73348 -10.65460 -10.30153 -10.23072 -10.12104 -10.07996 -10.06329 -9.95620 -9.79583 -9.55251 -8.85859 -8.84899 -8.51602 -8.37592 -6.97432 -5.92623 -4.09691 3.25638 3.33925 3.36951 4.39664 5.06993 5.08192 5.12739 5.24318 5.67878 5.68246 5.80529 5.83938 5.84564 5.86362 6.03572 6.06112 6.07255 6.30247 6.36485 6.38379 6.39925 6.43983 6.45065 6.59338 6.67076 6.73239 6.81614 6.86591 6.96093 6.98285 7.09535 7.15546 7.24476 7.28468 7.39693 7.47268 7.74589 7.90279 8.12920 8.36921 8.86155 9.13250 9.29177 9.62106 11.00087 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.008764 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.554306 B = 3194.117175 C = 3442.070082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.244 3.756 3 N -0.848 5.848 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.065 3.935 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.026 4.026 13 C -0.094 4.094 14 C -0.089 4.089 15 C -0.103 4.103 16 C -0.088 4.088 17 C -0.103 4.103 18 C -0.088 4.088 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.096 4.096 22 H 0.028 0.972 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.350 0.650 26 H 0.309 0.691 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -3.939 -9.880 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.153 3.847 3 N -0.378 5.378 4 C -0.569 4.569 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.026 4.026 13 C -0.132 4.132 14 C -0.107 4.107 15 C -0.141 4.141 16 C -0.107 4.107 17 C -0.140 4.140 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.133 4.133 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.165 0.835 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.500 -3.750 -10.436 11.368 hybrid contribution 0.756 -0.844 1.934 2.242 sum 3.257 -4.595 -8.502 10.198 Atomic orbital electron populations 1.21808 0.97870 0.98698 1.00363 1.18201 0.91358 0.85810 0.89328 1.59479 1.11079 1.15797 1.51413 1.21968 1.30820 1.12654 0.91423 0.92688 1.24966 0.94730 0.95101 0.98792 1.69701 1.36996 1.23214 1.23310 0.86707 0.78478 0.80208 0.83208 1.20972 1.21409 1.20116 1.20277 0.93559 0.93629 0.95170 1.21522 0.99613 0.99211 0.92805 1.21119 0.95188 0.95738 0.98685 1.21494 0.99738 0.95820 0.97013 1.21108 0.95192 0.98219 0.96154 1.21480 0.95710 0.96433 1.00402 1.21115 0.98280 0.95050 0.96225 1.21474 0.95702 0.99798 0.96939 1.21498 0.96426 0.99425 0.95742 1.21560 0.99778 0.96144 0.95858 0.95314 0.90480 0.96442 0.83464 0.88116 0.92955 0.91398 0.92845 0.92659 0.92616 0.93341 0.92586 0.93354 0.92477 0.92627 0.93407 0.92466 0.92500 0.91800 0.91571 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.80 37.16 0.29 -2.77 16 2 C 0.24 5.58 0.16 -132.75 -0.02 5.56 16 3 N -0.85 -19.39 8.01 -0.19 0.00 -19.39 16 4 C -0.53 -13.38 6.72 -34.44 -0.23 -13.61 16 5 H 0.05 1.42 5.67 -52.49 -0.30 1.12 16 6 C 0.07 1.70 5.22 -17.82 -0.09 1.60 16 7 N -0.89 -23.79 9.57 55.43 0.53 -23.26 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C -0.03 -0.50 0.12 -154.50 -0.02 -0.52 16 13 C -0.09 -1.71 3.96 -26.73 -0.11 -1.82 16 14 C -0.09 -1.37 3.19 -90.62 -0.29 -1.66 16 15 C -0.10 -1.52 5.19 -26.73 -0.14 -1.66 16 16 C -0.09 -1.40 3.19 -90.62 -0.29 -1.69 16 17 C -0.10 -1.56 5.19 -26.73 -0.14 -1.70 16 18 C -0.09 -1.39 3.20 -90.59 -0.29 -1.68 16 19 C -0.10 -1.50 5.19 -26.73 -0.14 -1.63 16 20 C -0.09 -1.74 3.89 -26.71 -0.10 -1.84 16 21 C -0.10 -1.81 3.87 -26.73 -0.10 -1.91 16 22 H 0.03 0.66 6.43 -51.93 -0.33 0.32 16 23 H 0.08 2.02 6.07 -51.93 -0.32 1.70 16 24 H 0.02 0.38 6.43 -51.93 -0.33 0.05 16 25 H 0.35 8.74 7.00 -39.29 -0.27 8.46 16 26 H 0.31 6.90 7.16 -39.29 -0.28 6.61 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.07 1.31 7.60 -51.93 -0.39 0.91 16 29 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 40 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 41 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 42 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -25.09 286.06 -8.73 -33.81 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.87 Total: 14.09 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -1.67 Total: -25.32 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.53 Total: -42.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.09 -8.73 -33.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.097 kcal (2) G-P(sol) polarization free energy of solvation -25.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds