Wall clock time and date at job start Mon Mar 30 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46994 * 119.99585 * 2 1 3 5 5 H 1.07999 * 119.99816 * 120.00055 * 4 2 1 6 6 C 1.37871 * 119.99987 * 300.00196 * 4 2 1 7 7 N 1.31514 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46685 * 89.99965 * 8 6 4 10 10 H 1.48494 * 109.47357 * 210.00044 * 8 6 4 11 11 H 1.48494 * 109.47227 * 330.00562 * 8 6 4 12 12 C 1.53002 * 109.47454 * 239.99934 * 2 1 3 13 13 C 1.52996 * 109.46969 * 59.99949 * 12 2 1 14 14 C 1.53002 * 109.46972 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.47233 * 59.99538 * 14 13 12 16 16 C 1.52996 * 109.47328 * 300.00469 * 15 14 13 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 19 19 C 1.52997 * 109.46817 * 299.99733 * 14 13 12 20 20 C 1.53001 * 109.46963 * 180.02562 * 12 2 1 21 21 C 1.52993 * 109.47473 * 60.00001 * 16 15 14 22 22 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47056 * 300.00052 * 1 2 3 24 24 H 1.09002 * 109.46838 * 60.00672 * 1 2 3 25 25 H 1.00905 * 111.00319 * 56.04489 * 3 2 1 26 26 H 1.00900 * 111.00464 * 179.97438 * 3 2 1 27 27 H 0.97005 * 120.00032 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47452 * 59.99938 * 13 12 2 29 29 H 1.09000 * 109.47054 * 300.00097 * 13 12 2 30 30 H 1.09002 * 109.47070 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.46724 * 60.00652 * 15 14 13 32 32 H 1.09001 * 109.47194 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.47108 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 35 35 H 1.09002 * 109.47097 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47533 * 179.97438 * 19 14 13 38 38 H 1.08996 * 109.47853 * 300.00202 * 19 14 13 39 39 H 1.08996 * 109.46778 * 299.99646 * 20 12 2 40 40 H 1.08992 * 109.47514 * 59.99933 * 20 12 2 41 41 H 1.09002 * 109.47722 * 180.02562 * 21 16 15 42 42 H 1.09004 * 109.46998 * 59.99561 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0401 -0.7213 -1.2492 13 6 1.5301 0.0000 -2.4984 14 6 2.0397 -0.7217 -3.7477 15 6 1.5293 -2.1640 -3.7473 16 6 2.0393 -2.8852 -2.4980 17 6 3.5693 -2.8857 -2.4983 18 6 4.0797 -1.4433 -2.4986 19 6 3.5697 -0.7221 -3.7479 20 6 3.5701 -0.7218 -1.2488 21 6 1.5297 -2.1637 -1.2489 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6441 1.9013 0.7814 26 1 3.0283 1.4120 0.0004 27 1 0.7080 1.1610 3.4844 28 1 1.8934 1.0276 -2.4985 29 1 0.4401 -0.0001 -2.4985 30 1 1.6760 -0.2081 -4.6377 31 1 0.4393 -2.1637 -3.7472 32 1 1.8920 -2.6780 -4.6375 33 1 1.6753 -3.9127 -2.4976 34 1 3.9323 -3.3998 -3.3883 35 1 3.9326 -3.3998 -1.6085 36 1 5.1697 -1.4436 -2.4983 37 1 3.9328 -1.2365 -4.6376 38 1 3.9334 0.3054 -3.7481 39 1 3.9337 0.3058 -1.2486 40 1 3.9331 -1.2358 -0.3589 41 1 1.8933 -2.6772 -0.3588 42 1 0.4396 -2.1633 -1.2488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217144414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:05 Heat of formation + Delta-G solvation = -46.780412 kcal Electronic energy + Delta-G solvation = -20620.010123 eV Core-core repulsion = 17983.104658 eV Total energy + Delta-G solvation = -2636.905465 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.30873 -37.65384 -33.91185 -33.39379 -33.31684 -31.37486 -29.08290 -27.56010 -26.41052 -26.16655 -23.26548 -22.10836 -21.98273 -19.93801 -18.36978 -17.92809 -16.72772 -15.88473 -15.28340 -15.24022 -15.10874 -14.98935 -14.83157 -14.30686 -14.02735 -13.88707 -13.38137 -13.30105 -13.23391 -12.92517 -12.86877 -12.57792 -12.38616 -12.00325 -11.87328 -11.64359 -11.55073 -11.50679 -11.38889 -11.28043 -11.20321 -10.56666 -10.24986 -10.15379 -10.04429 -8.91428 -7.91904 -6.15353 1.35048 1.39502 1.46165 2.42485 3.19945 3.81322 3.82991 3.86062 4.35645 4.41205 4.52519 4.54152 4.56022 4.61681 4.67456 4.67843 4.73657 4.78617 4.98521 5.02984 5.05871 5.10544 5.13938 5.24205 5.26655 5.31604 5.36223 5.41776 5.45598 5.46902 5.53760 5.56770 5.57383 5.74706 5.79768 5.81207 5.94928 6.10327 6.19243 6.39860 6.87630 7.21333 7.29963 7.59430 8.96209 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.008764 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.554306 B = 3194.117175 C = 3442.070082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.237 3.763 3 N -0.839 5.839 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.936 3.064 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.277 1.277 12 C -0.023 4.023 13 C -0.090 4.090 14 C -0.087 4.087 15 C -0.100 4.100 16 C -0.086 4.086 17 C -0.101 4.101 18 C -0.086 4.086 19 C -0.098 4.098 20 C -0.089 4.089 21 C -0.093 4.093 22 H 0.025 0.975 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.337 0.663 26 H 0.312 0.688 27 H 0.258 0.742 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -5.034 -12.095 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 N -0.367 5.367 4 C -0.572 4.572 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.764 3.236 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.023 4.023 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.137 4.137 16 C -0.105 4.105 17 C -0.138 4.138 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.131 4.131 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.495 -4.853 -12.660 14.002 hybrid contribution 0.422 -0.485 2.668 2.745 sum 3.917 -5.338 -9.992 11.987 Atomic orbital electron populations 1.21683 0.98660 0.98101 0.99304 1.18315 0.90801 0.85851 0.90459 1.59497 1.11143 1.15672 1.50419 1.22184 1.30221 1.12238 0.92533 0.93666 1.25536 0.95252 0.95844 1.00961 1.69813 1.37761 1.24014 1.23423 0.85905 0.77859 0.79162 0.80641 1.20821 1.21549 1.20228 1.20175 0.94285 0.93716 0.94149 1.21431 0.98733 0.98716 0.93834 1.21121 0.95909 0.96051 0.97444 1.21488 0.99766 0.95216 0.97258 1.21103 0.95891 0.98594 0.94900 1.21482 0.94915 0.96075 1.01367 1.21112 0.99141 0.95209 0.95024 1.21463 0.94841 1.00013 0.97207 1.21408 0.95586 0.99053 0.96666 1.21485 0.98884 0.95912 0.96839 0.95625 0.93208 0.95622 0.84918 0.87874 0.93240 0.92785 0.94146 0.90833 0.92758 0.90488 0.91279 0.90444 0.93447 0.91200 0.90601 0.92562 0.93412 0.94385 0.94252 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 7.80 71.98 0.56 -5.24 16 2 C 0.24 11.06 0.16 2.78 0.00 11.07 16 3 N -0.84 -39.16 8.01 -154.51 -1.24 -40.40 16 4 C -0.53 -27.55 6.72 25.60 0.17 -27.38 16 5 H 0.05 2.40 5.67 -2.91 -0.02 2.38 16 6 C 0.02 1.22 5.22 84.65 0.44 1.66 16 7 N -0.91 -49.62 9.57 21.44 0.21 -49.41 16 8 Si 0.94 43.38 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C -0.02 -0.88 0.12 -52.18 -0.01 -0.89 16 13 C -0.09 -3.17 3.96 30.59 0.12 -3.05 16 14 C -0.09 -2.39 3.19 -10.79 -0.03 -2.43 16 15 C -0.10 -2.57 5.19 30.59 0.16 -2.41 16 16 C -0.09 -2.51 3.19 -10.80 -0.03 -2.55 16 17 C -0.10 -2.73 5.19 30.59 0.16 -2.57 16 18 C -0.09 -2.48 3.20 -10.78 -0.03 -2.51 16 19 C -0.10 -2.49 5.19 30.60 0.16 -2.33 16 20 C -0.09 -3.28 3.89 30.61 0.12 -3.16 16 21 C -0.09 -3.50 3.87 30.59 0.12 -3.39 16 22 H 0.02 1.20 6.43 -2.38 -0.02 1.19 16 23 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 24 H 0.02 1.15 6.43 -2.39 -0.02 1.14 16 25 H 0.34 17.28 7.00 -89.69 -0.63 16.66 16 26 H 0.31 14.16 7.16 -89.69 -0.64 13.52 16 27 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 28 H 0.05 2.04 7.60 -2.39 -0.02 2.02 16 29 H 0.04 1.51 6.43 -2.39 -0.02 1.49 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.80 6.67 -2.39 -0.02 1.79 16 40 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 41 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 42 H 0.04 1.66 6.43 -2.39 -0.02 1.65 16 Total: -1.00 -54.11 286.06 2.64 -51.47 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.25 Total: 38.11 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 1.90 Total: -45.17 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.03 Total: -89.81 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -54.11 2.64 -51.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.691 kcal (2) G-P(sol) polarization free energy of solvation -54.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds