Wall clock time and date at job start Mon Mar 30 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99873 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47776 * 59.99746 * 8 6 4 10 10 H 1.48503 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 299.99350 * 8 6 4 12 12 C 1.53002 * 109.47143 * 120.00031 * 2 1 3 13 13 C 1.53008 * 109.46800 * 59.99991 * 12 2 1 14 14 C 1.53002 * 109.46800 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47143 * 300.00009 * 14 13 12 16 16 C 1.52997 * 109.47232 * 59.99957 * 15 14 13 17 17 C 1.53006 * 109.46974 * 60.00243 * 16 15 14 18 18 C 1.52997 * 109.46943 * 299.99934 * 17 16 15 19 19 C 1.52996 * 109.47343 * 59.99943 * 14 13 12 20 20 C 1.52996 * 109.47340 * 300.00331 * 12 2 1 21 21 C 1.52993 * 109.47347 * 299.99756 * 16 15 14 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99813 * 1 2 3 25 25 H 1.00907 * 110.99802 * 180.02562 * 3 2 1 26 26 H 1.00895 * 111.00234 * 303.95141 * 3 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47188 * 300.00076 * 13 12 2 29 29 H 1.09002 * 109.47288 * 60.00162 * 13 12 2 30 30 H 1.09004 * 109.46930 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.47153 * 299.99965 * 15 14 13 32 32 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.46611 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46884 * 59.99622 * 17 16 15 36 36 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.47554 * 179.97438 * 19 14 13 38 38 H 1.09004 * 109.47368 * 59.99791 * 19 14 13 39 39 H 1.09004 * 109.46785 * 299.99692 * 20 12 2 40 40 H 1.09000 * 109.47196 * 59.99588 * 20 12 2 41 41 H 1.08992 * 109.47718 * 300.00082 * 21 16 15 42 42 H 1.08996 * 109.47340 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8063 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 6 1.5299 -2.1638 1.2492 14 6 2.0405 -2.8853 2.4981 15 6 3.5704 -2.8853 2.4975 16 6 4.0804 -1.4428 2.4975 17 6 3.5710 -0.7218 3.7471 18 6 2.0410 -0.7218 3.7478 19 6 1.5310 -2.1643 3.7477 20 6 1.5300 -0.0001 2.4985 21 6 3.5700 -0.7214 1.2486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.0284 1.4118 -0.0004 26 1 1.6443 1.9013 -0.7813 27 1 0.7082 1.1609 -3.4843 28 1 0.4399 -2.1638 1.2491 29 1 1.8933 -2.6777 0.3592 30 1 1.6767 -3.9128 2.4983 31 1 3.9334 -3.3990 1.6072 32 1 3.9341 -3.3997 3.3870 33 1 5.1705 -1.4428 2.4975 34 1 3.9348 0.3058 3.7473 35 1 3.9347 -1.2358 4.6368 36 1 1.6781 -0.2077 4.6378 37 1 1.8943 -2.6784 4.6374 38 1 0.4410 -2.1642 3.7482 39 1 1.8933 1.0276 2.4985 40 1 0.4400 -0.0001 2.4985 41 1 3.9329 -1.2350 0.3584 42 1 3.9330 0.3064 1.2488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217144421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:09 Heat of formation + Delta-G solvation = -33.868083 kcal Electronic energy + Delta-G solvation = -20619.185179 eV Core-core repulsion = 17982.839635 eV Total energy + Delta-G solvation = -2636.345545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92014 -35.92586 -32.13645 -32.08487 -31.93691 -29.67389 -27.25437 -25.80812 -25.02121 -24.59095 -21.61893 -20.80159 -20.66912 -18.23982 -16.99074 -16.04604 -14.87856 -14.18004 -13.93551 -13.81947 -13.72730 -13.38623 -13.12521 -12.84256 -12.70837 -12.39888 -11.99236 -11.86681 -11.56878 -11.21351 -11.01607 -10.73360 -10.65729 -10.31464 -10.22980 -10.12062 -10.08077 -10.06164 -9.95315 -9.79787 -9.56005 -8.85770 -8.84915 -8.51479 -8.36968 -6.97514 -5.92431 -4.09528 3.27383 3.33072 3.35998 4.39745 5.06999 5.08175 5.12759 5.24421 5.67897 5.68270 5.80533 5.83972 5.84499 5.86362 6.03569 6.06133 6.07260 6.30277 6.36565 6.38354 6.39952 6.44024 6.45042 6.59322 6.67126 6.73241 6.81637 6.86617 6.96120 6.98269 7.09542 7.15557 7.24565 7.28527 7.39780 7.47238 7.74636 7.90252 8.12952 8.37012 8.86174 9.13212 9.29288 9.62173 11.00303 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.008765 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.640730 B = 3193.926635 C = 3441.956454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.245 3.755 3 N -0.848 5.848 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.066 3.934 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.280 1.280 12 C -0.026 4.026 13 C -0.096 4.096 14 C -0.088 4.088 15 C -0.103 4.103 16 C -0.088 4.088 17 C -0.102 4.102 18 C -0.089 4.089 19 C -0.103 4.103 20 C -0.094 4.094 21 C -0.093 4.093 22 H 0.028 0.972 23 H 0.017 0.983 24 H 0.076 0.924 25 H 0.309 0.691 26 H 0.350 0.650 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.984 -3.924 9.863 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.153 3.847 3 N -0.378 5.378 4 C -0.570 4.570 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.205 1.205 12 C -0.026 4.026 13 C -0.133 4.133 14 C -0.107 4.107 15 C -0.140 4.140 16 C -0.107 4.107 17 C -0.139 4.139 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.132 4.132 21 C -0.131 4.131 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.165 0.835 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.500 -3.728 10.417 11.342 hybrid contribution 0.755 -0.863 -1.927 2.242 sum 3.255 -4.591 8.490 10.186 Atomic orbital electron populations 1.21809 0.97878 0.98694 1.00360 1.18193 0.91346 0.85809 0.89313 1.59481 1.11081 1.15796 1.51404 1.21932 1.30931 1.12661 0.91432 0.92745 1.24966 0.94733 0.95079 0.98780 1.69688 1.36958 1.23149 1.23429 0.86765 0.79077 0.79927 0.82797 1.20472 1.21487 1.20541 1.20278 0.93557 0.93622 0.95173 1.21560 0.99776 0.96145 0.95853 1.21109 0.95193 0.98217 0.96156 1.21479 0.95708 0.96434 1.00402 1.21106 0.98281 0.95050 0.96228 1.21475 0.95702 0.99803 0.96939 1.21128 0.95186 0.95731 0.98685 1.21492 0.99739 0.95817 0.97014 1.21534 0.99605 0.99211 0.92805 1.21489 0.96423 0.99429 0.95748 0.95318 0.96446 0.90483 0.88112 0.83468 0.92888 0.92626 0.91587 0.92586 0.92479 0.93353 0.92629 0.92469 0.93410 0.92662 0.93344 0.92616 0.91402 0.92835 0.91794 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 7.80 37.16 0.29 -2.78 16 2 C 0.24 5.59 0.16 -132.75 -0.02 5.57 16 3 N -0.85 -19.39 8.01 -0.19 0.00 -19.39 16 4 C -0.53 -13.40 6.72 -34.44 -0.23 -13.63 16 5 H 0.05 1.40 5.67 -52.49 -0.30 1.10 16 6 C 0.07 1.71 5.22 -17.82 -0.09 1.62 16 7 N -0.89 -23.79 9.57 55.43 0.53 -23.26 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C -0.03 -0.50 0.12 -154.50 -0.02 -0.52 16 13 C -0.10 -1.81 3.87 -26.73 -0.10 -1.91 16 14 C -0.09 -1.40 3.19 -90.62 -0.29 -1.69 16 15 C -0.10 -1.56 5.19 -26.73 -0.14 -1.69 16 16 C -0.09 -1.39 3.19 -90.62 -0.29 -1.68 16 17 C -0.10 -1.50 5.19 -26.73 -0.14 -1.64 16 18 C -0.09 -1.37 3.20 -90.59 -0.29 -1.66 16 19 C -0.10 -1.52 5.19 -26.73 -0.14 -1.66 16 20 C -0.09 -1.71 3.97 -26.70 -0.11 -1.82 16 21 C -0.09 -1.74 3.89 -26.73 -0.10 -1.84 16 22 H 0.03 0.66 6.43 -51.93 -0.33 0.32 16 23 H 0.02 0.38 6.43 -51.93 -0.33 0.04 16 24 H 0.08 2.02 6.07 -51.93 -0.32 1.70 16 25 H 0.31 6.90 7.16 -39.29 -0.28 6.62 16 26 H 0.35 8.74 6.99 -39.29 -0.27 8.46 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 29 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.31 7.60 -51.93 -0.39 0.91 16 40 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 41 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 42 H 0.06 1.08 6.66 -51.93 -0.35 0.73 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -25.06 286.06 -8.73 -33.79 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -6.87 Total: 14.13 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -1.67 Total: -25.33 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.53 Total: -42.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.06 -8.73 -33.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.080 kcal (2) G-P(sol) polarization free energy of solvation -25.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds