Wall clock time and date at job start Mon Mar 30 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99873 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47776 * 59.99746 * 8 6 4 10 10 H 1.48503 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 299.99350 * 8 6 4 12 12 C 1.53002 * 109.47143 * 120.00031 * 2 1 3 13 13 C 1.53008 * 109.46800 * 59.99991 * 12 2 1 14 14 C 1.53002 * 109.46800 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47143 * 300.00009 * 14 13 12 16 16 C 1.52997 * 109.47232 * 59.99957 * 15 14 13 17 17 C 1.53006 * 109.46974 * 60.00243 * 16 15 14 18 18 C 1.52997 * 109.46943 * 299.99934 * 17 16 15 19 19 C 1.52996 * 109.47343 * 59.99943 * 14 13 12 20 20 C 1.52996 * 109.47340 * 300.00331 * 12 2 1 21 21 C 1.52993 * 109.47347 * 299.99756 * 16 15 14 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99813 * 1 2 3 25 25 H 1.00907 * 110.99802 * 180.02562 * 3 2 1 26 26 H 1.00895 * 111.00234 * 303.95141 * 3 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47188 * 300.00076 * 13 12 2 29 29 H 1.09002 * 109.47288 * 60.00162 * 13 12 2 30 30 H 1.09004 * 109.46930 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.47153 * 299.99965 * 15 14 13 32 32 H 1.09001 * 109.46832 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.46611 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46884 * 59.99622 * 17 16 15 36 36 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.47554 * 179.97438 * 19 14 13 38 38 H 1.09004 * 109.47368 * 59.99791 * 19 14 13 39 39 H 1.09004 * 109.46785 * 299.99692 * 20 12 2 40 40 H 1.09000 * 109.47196 * 59.99588 * 20 12 2 41 41 H 1.08992 * 109.47718 * 300.00082 * 21 16 15 42 42 H 1.08996 * 109.47340 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8063 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 6 1.5299 -2.1638 1.2492 14 6 2.0405 -2.8853 2.4981 15 6 3.5704 -2.8853 2.4975 16 6 4.0804 -1.4428 2.4975 17 6 3.5710 -0.7218 3.7471 18 6 2.0410 -0.7218 3.7478 19 6 1.5310 -2.1643 3.7477 20 6 1.5300 -0.0001 2.4985 21 6 3.5700 -0.7214 1.2486 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.0284 1.4118 -0.0004 26 1 1.6443 1.9013 -0.7813 27 1 0.7082 1.1609 -3.4843 28 1 0.4399 -2.1638 1.2491 29 1 1.8933 -2.6777 0.3592 30 1 1.6767 -3.9128 2.4983 31 1 3.9334 -3.3990 1.6072 32 1 3.9341 -3.3997 3.3870 33 1 5.1705 -1.4428 2.4975 34 1 3.9348 0.3058 3.7473 35 1 3.9347 -1.2358 4.6368 36 1 1.6781 -0.2077 4.6378 37 1 1.8943 -2.6784 4.6374 38 1 0.4410 -2.1642 3.7482 39 1 1.8933 1.0276 2.4985 40 1 0.4400 -0.0001 2.4985 41 1 3.9329 -1.2350 0.3584 42 1 3.9330 0.3064 1.2488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217144421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:08 Heat of formation + Delta-G solvation = -46.715513 kcal Electronic energy + Delta-G solvation = -20619.742286 eV Core-core repulsion = 17982.839635 eV Total energy + Delta-G solvation = -2636.902651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30833 -37.65309 -33.91093 -33.39586 -33.31436 -31.37453 -29.08267 -27.55825 -26.41063 -26.16578 -23.26490 -22.10860 -21.98266 -19.93654 -18.36949 -17.92516 -16.72843 -15.88509 -15.28379 -15.24151 -15.10760 -14.98444 -14.83033 -14.30672 -14.02745 -13.88807 -13.38179 -13.29617 -13.23262 -12.91746 -12.86864 -12.57918 -12.38728 -12.00750 -11.88341 -11.64026 -11.54995 -11.50642 -11.38864 -11.28120 -11.20786 -10.56000 -10.25006 -10.15230 -10.04390 -8.91493 -7.91708 -6.15196 1.36791 1.39559 1.44671 2.42651 3.20080 3.81297 3.82984 3.86080 4.35675 4.41201 4.52495 4.54122 4.56070 4.61661 4.67435 4.67841 4.73668 4.78622 4.98524 5.02998 5.05856 5.10500 5.13915 5.24212 5.26661 5.31613 5.36273 5.41729 5.45586 5.46883 5.53770 5.56766 5.57358 5.74611 5.79729 5.81214 5.94924 6.10308 6.19265 6.39885 6.87626 7.21331 7.30013 7.59492 8.96297 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.008765 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.640730 B = 3193.926635 C = 3441.956454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.237 3.763 3 N -0.839 5.839 4 C -0.533 4.533 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.023 4.023 13 C -0.093 4.093 14 C -0.086 4.086 15 C -0.101 4.101 16 C -0.086 4.086 17 C -0.098 4.098 18 C -0.087 4.087 19 C -0.100 4.100 20 C -0.090 4.090 21 C -0.089 4.089 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.311 0.689 26 H 0.337 0.663 27 H 0.258 0.742 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -5.032 12.075 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 N -0.367 5.367 4 C -0.573 4.573 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.764 3.236 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.204 1.204 12 C -0.023 4.023 13 C -0.131 4.131 14 C -0.105 4.105 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.127 4.127 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.151 0.849 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.497 -4.844 12.638 13.979 hybrid contribution 0.421 -0.500 -2.659 2.738 sum 3.918 -5.345 9.979 11.979 Atomic orbital electron populations 1.21684 0.98669 0.98089 0.99305 1.18309 0.90790 0.85853 0.90451 1.59500 1.11141 1.15673 1.50412 1.22161 1.30334 1.12265 0.92542 0.93667 1.25537 0.95253 0.95821 1.00951 1.69803 1.37734 1.23955 1.23498 0.85967 0.78508 0.78819 0.80300 1.20630 1.21496 1.20399 1.20175 0.94272 0.93720 0.94147 1.21486 0.98879 0.95907 0.96854 1.21104 0.95887 0.98598 0.94897 1.21481 0.94914 0.96063 1.01376 1.21102 0.99136 0.95223 0.95025 1.21464 0.94845 1.00014 0.97207 1.21129 0.95901 0.96050 0.97442 1.21486 0.99768 0.95208 0.97263 1.21443 0.98727 0.98715 0.93838 1.21397 0.95595 0.99046 0.96663 0.95641 0.95626 0.93204 0.87875 0.84918 0.93220 0.93955 0.94227 0.91265 0.93430 0.90443 0.91212 0.92573 0.90601 0.90840 0.90491 0.92759 0.92795 0.94135 0.94396 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 7.80 71.98 0.56 -5.24 16 2 C 0.24 11.08 0.16 2.78 0.00 11.08 16 3 N -0.84 -39.17 8.01 -154.52 -1.24 -40.41 16 4 C -0.53 -27.62 6.72 25.60 0.17 -27.44 16 5 H 0.05 2.39 5.67 -2.91 -0.02 2.37 16 6 C 0.02 1.24 5.22 84.66 0.44 1.68 16 7 N -0.91 -49.62 9.57 21.45 0.21 -49.42 16 8 Si 0.94 43.35 29.54 68.60 2.03 45.38 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 C -0.02 -0.88 0.12 -52.18 -0.01 -0.88 16 13 C -0.09 -3.50 3.87 30.60 0.12 -3.39 16 14 C -0.09 -2.51 3.19 -10.79 -0.03 -2.55 16 15 C -0.10 -2.73 5.19 30.59 0.16 -2.57 16 16 C -0.09 -2.48 3.19 -10.79 -0.03 -2.51 16 17 C -0.10 -2.49 5.19 30.60 0.16 -2.34 16 18 C -0.09 -2.39 3.20 -10.78 -0.03 -2.43 16 19 C -0.10 -2.57 5.19 30.59 0.16 -2.41 16 20 C -0.09 -3.17 3.97 30.61 0.12 -3.05 16 21 C -0.09 -3.28 3.89 30.59 0.12 -3.16 16 22 H 0.02 1.20 6.43 -2.38 -0.02 1.18 16 23 H 0.02 1.15 6.43 -2.39 -0.02 1.14 16 24 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 25 H 0.31 14.17 7.16 -89.69 -0.64 13.52 16 26 H 0.34 17.28 6.99 -89.70 -0.63 16.66 16 27 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.04 1.66 6.43 -2.39 -0.02 1.64 16 29 H 0.04 1.66 6.62 -2.39 -0.02 1.65 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 2.04 7.60 -2.38 -0.02 2.02 16 40 H 0.04 1.51 6.43 -2.39 -0.02 1.50 16 41 H 0.04 1.56 6.61 -2.39 -0.02 1.54 16 42 H 0.05 1.80 6.66 -2.39 -0.02 1.78 16 Total: -1.00 -54.06 286.06 2.64 -51.42 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.25 Total: 38.23 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 1.90 Total: -45.20 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -1.03 Total: -89.82 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -54.06 2.64 -51.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.705 kcal (2) G-P(sol) polarization free energy of solvation -54.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds