Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46891 * 109.46965 * 2 1 4 4 C 1.50706 * 109.46782 * 119.99593 * 2 1 3 5 5 H 1.08002 * 119.99177 * 117.01145 * 4 2 1 6 6 C 1.37878 * 120.00226 * 297.01174 * 4 2 1 7 7 N 1.31516 * 119.99655 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00045 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46756 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47138 * 119.99839 * 8 6 4 11 11 H 1.48497 * 109.47400 * 240.00262 * 8 6 4 12 12 C 1.52998 * 109.47240 * 239.99464 * 2 1 3 13 13 C 1.52995 * 109.47254 * 301.07874 * 12 2 1 14 14 C 1.53004 * 109.47004 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.47010 * 60.00087 * 14 13 12 16 16 C 1.53002 * 109.46901 * 60.00024 * 15 14 13 17 17 C 1.52998 * 109.46989 * 299.99682 * 16 15 14 18 18 C 1.52993 * 109.47327 * 299.99910 * 13 12 2 19 19 C 1.52995 * 109.47254 * 300.00318 * 17 16 15 20 20 C 1.52993 * 109.47327 * 60.00090 * 19 17 16 21 21 C 1.52995 * 109.47166 * 299.99814 * 15 14 13 22 22 H 1.08994 * 109.47577 * 300.00360 * 1 2 3 23 23 H 1.09000 * 109.47013 * 60.00571 * 1 2 3 24 24 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.00906 * 111.00314 * 174.12249 * 3 2 1 26 26 H 1.00904 * 111.00393 * 298.07352 * 3 2 1 27 27 H 0.96999 * 119.99320 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46677 * 61.08193 * 12 2 1 29 29 H 1.09006 * 109.47394 * 60.00203 * 13 12 2 30 30 H 1.09003 * 109.47271 * 299.99640 * 14 13 12 31 31 H 1.09001 * 109.46746 * 180.02562 * 14 13 12 32 32 H 1.09006 * 109.46746 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.46384 * 180.02562 * 16 15 14 34 34 H 1.08993 * 109.47228 * 60.00197 * 16 15 14 35 35 H 1.09000 * 109.46677 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47589 * 180.02562 * 18 13 12 37 37 H 1.08998 * 109.47519 * 59.99975 * 18 13 12 38 38 H 1.08997 * 109.47349 * 299.99891 * 19 17 16 39 39 H 1.09006 * 109.47138 * 180.02562 * 19 17 16 40 40 H 1.09005 * 109.47520 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47539 * 300.00202 * 21 15 14 42 42 H 1.08997 * 109.47349 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6128 -1.6158 1.1322 6 6 1.7508 -0.2044 2.4819 7 7 1.0435 0.8979 2.6015 8 14 2.3728 -1.0853 4.0072 9 1 3.1373 -2.2929 3.6041 10 1 3.2567 -0.1750 4.7786 11 1 1.2193 -1.4881 4.8512 12 6 2.0401 -0.7214 -1.2491 13 6 1.5081 -2.1558 -1.2627 14 6 2.0176 -2.8769 -2.5122 15 6 3.5474 -2.9004 -2.4993 16 6 4.0355 -3.6373 -1.2504 17 6 3.5260 -2.9161 -0.0010 18 6 1.9957 -2.8924 -0.0136 19 6 4.0580 -1.4817 0.0126 20 6 3.5698 -0.7449 -1.2362 21 6 4.0794 -1.4660 -2.4857 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0237 1.4136 0.0965 26 1 1.7222 1.8737 -0.8312 27 1 0.8451 1.2536 3.4819 28 1 1.6926 -0.1965 -2.1390 29 1 0.4182 -2.1391 -1.2724 30 1 1.6697 -2.3520 -3.4020 31 1 1.6382 -3.8987 -2.5221 32 1 3.9104 -3.4146 -3.3893 33 1 5.1253 -3.6536 -1.2411 34 1 3.6566 -4.6592 -1.2601 35 1 3.8734 -3.4414 0.8887 36 1 1.6171 -3.9145 -0.0235 37 1 1.6324 -2.3786 0.8763 38 1 5.1478 -1.4984 0.0218 39 1 3.6953 -0.9681 0.9030 40 1 3.9485 0.2773 -1.2263 41 1 3.7316 -0.9410 -3.3754 42 1 5.1692 -1.4827 -2.4761 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217144431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = 43.766045 kcal Electronic energy + Delta-G solvation = -21084.281068 eV Core-core repulsion = 18451.301991 eV Total energy + Delta-G solvation = -2632.979076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -41.36119 -35.73832 -32.65968 -31.94054 -31.65954 -30.25956 -27.26753 -25.86214 -25.04205 -24.45362 -21.05671 -20.58585 -20.47358 -18.79977 -16.92428 -16.36892 -14.75834 -14.36083 -13.90612 -13.71327 -13.61183 -13.31862 -13.15948 -12.56381 -12.55759 -12.16438 -12.02158 -11.73842 -11.68760 -11.19650 -10.96946 -10.72576 -10.52475 -10.32736 -10.21979 -10.14909 -10.04593 -9.94889 -9.69533 -9.54162 -8.86096 -8.76448 -8.70032 -8.24179 -7.38476 -6.78179 -5.80765 -3.85506 3.31659 3.41431 3.43761 4.46868 5.15976 5.16997 5.24008 5.35160 5.84250 5.85547 5.89968 5.96143 5.96903 5.97994 6.09535 6.11926 6.15324 6.27939 6.34449 6.47966 6.54584 6.56686 6.59880 6.65080 6.71096 6.78489 6.81925 6.86446 6.93454 7.13999 7.26427 7.30133 7.34467 7.36933 7.48285 7.70726 7.75796 7.92072 8.16824 8.43006 8.76704 9.15525 9.29857 9.68594 11.18195 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.011443 C = 0.009802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.757558 B = 2446.414859 C = 2855.855492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.251 3.749 3 N -0.809 5.809 4 C -0.568 4.568 5 H 0.139 0.861 6 C 0.081 3.919 7 N -0.833 5.833 8 Si 0.861 3.139 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.096 4.096 13 C -0.060 4.060 14 C -0.110 4.110 15 C -0.080 4.080 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.163 4.163 19 C -0.169 4.169 20 C -0.062 4.062 21 C -0.109 4.109 22 H 0.081 0.919 23 H 0.001 0.999 24 H 0.031 0.969 25 H 0.319 0.681 26 H 0.291 0.709 27 H 0.251 0.749 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.157 0.843 38 H 0.023 0.977 39 H 0.163 0.837 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -5.411 -7.024 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.159 3.841 3 N -0.335 5.335 4 C -0.604 4.604 5 H 0.155 0.845 6 C -0.127 4.127 7 N -0.466 5.466 8 Si 0.689 3.311 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.116 4.116 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.098 4.098 16 C -0.142 4.142 17 C -0.096 4.096 18 C -0.199 4.199 19 C -0.204 4.204 20 C -0.080 4.080 21 C -0.146 4.146 22 H 0.100 0.900 23 H 0.020 0.980 24 H 0.050 0.950 25 H 0.131 0.869 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.174 0.826 38 H 0.042 0.958 39 H 0.180 0.820 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.997 -5.162 -6.219 8.620 hybrid contribution 0.954 -0.830 -0.379 1.320 sum 3.952 -5.992 -6.598 9.749 Atomic orbital electron populations 1.21776 0.98055 0.98597 0.99896 1.18331 0.91324 0.84297 0.90102 1.59114 1.15316 1.17284 1.41822 1.22744 1.35673 1.12213 0.89808 0.84486 1.25083 0.94826 0.94415 0.98351 1.70139 1.35662 1.18943 1.21906 0.87034 0.78933 0.80259 0.84877 1.19380 1.21208 1.21230 1.21923 0.94146 0.95823 0.99758 1.20794 0.98656 0.94961 0.93519 1.21618 0.94964 0.99514 0.98667 1.20951 0.95908 0.96013 0.96935 1.21533 0.99000 0.97993 0.95701 1.20861 0.96762 0.96448 0.95494 1.23050 0.94340 0.98506 1.03996 1.23191 0.96989 0.95889 1.04337 1.20776 0.95986 0.97433 0.93818 1.21590 0.98958 0.95571 0.98522 0.90017 0.98024 0.94970 0.86879 0.89901 0.93902 0.94883 0.92181 0.93423 0.93292 0.93130 0.93368 0.93327 0.92907 0.95640 0.82590 0.95821 0.82027 0.92945 0.93463 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.21 37.16 0.30 -2.56 16 2 C 0.25 5.49 0.36 -132.75 -0.05 5.44 16 3 N -0.81 -17.92 7.88 -0.19 0.00 -17.92 16 4 C -0.57 -13.17 2.89 -34.44 -0.10 -13.27 16 5 H 0.14 3.04 1.47 -52.49 -0.08 2.97 16 6 C 0.08 2.01 5.23 -17.82 -0.09 1.92 16 7 N -0.83 -22.23 10.89 55.43 0.60 -21.63 16 8 Si 0.86 19.55 29.54 -169.99 -5.02 14.53 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.10 -1.85 1.66 -90.62 -0.15 -2.00 16 13 C -0.06 -1.12 2.34 -90.62 -0.21 -1.33 16 14 C -0.11 -1.80 5.19 -26.73 -0.14 -1.94 16 15 C -0.08 -1.26 3.19 -90.62 -0.29 -1.55 16 16 C -0.10 -1.70 5.19 -26.73 -0.14 -1.83 16 17 C -0.08 -1.41 2.67 -90.60 -0.24 -1.65 16 18 C -0.16 -3.13 4.78 -26.71 -0.13 -3.26 16 19 C -0.17 -3.22 4.78 -26.74 -0.13 -3.35 16 20 C -0.06 -1.12 2.41 -90.62 -0.22 -1.34 16 21 C -0.11 -1.78 5.19 -26.73 -0.14 -1.91 16 22 H 0.08 2.11 6.31 -51.93 -0.33 1.78 16 23 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 24 H 0.03 0.70 6.41 -51.93 -0.33 0.37 16 25 H 0.32 6.94 7.40 -39.29 -0.29 6.64 16 26 H 0.29 5.98 8.99 -39.29 -0.35 5.63 16 27 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.16 6.41 -51.93 -0.33 0.82 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.16 3.40 3.96 -59.53 -0.24 3.17 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.16 3.52 3.83 -69.53 -0.27 3.25 16 40 H 0.05 0.97 6.83 -51.93 -0.35 0.62 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -24.66 281.37 -8.68 -33.33 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -6.78 Total: 16.09 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -1.72 Total: -28.65 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.60 Total: -39.55 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -24.66 -8.68 -33.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.100 kcal (2) G-P(sol) polarization free energy of solvation -24.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.27 seconds