Wall clock time and date at job start Mon Mar 30 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46891 * 109.46965 * 2 1 4 4 C 1.50706 * 109.46782 * 119.99593 * 2 1 3 5 5 H 1.08002 * 119.99177 * 117.01145 * 4 2 1 6 6 C 1.37878 * 120.00226 * 297.01174 * 4 2 1 7 7 N 1.31516 * 119.99655 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00045 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46756 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47138 * 119.99839 * 8 6 4 11 11 H 1.48497 * 109.47400 * 240.00262 * 8 6 4 12 12 C 1.52998 * 109.47240 * 239.99464 * 2 1 3 13 13 C 1.52995 * 109.47254 * 301.07874 * 12 2 1 14 14 C 1.53004 * 109.47004 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.47010 * 60.00087 * 14 13 12 16 16 C 1.53002 * 109.46901 * 60.00024 * 15 14 13 17 17 C 1.52998 * 109.46989 * 299.99682 * 16 15 14 18 18 C 1.52993 * 109.47327 * 299.99910 * 13 12 2 19 19 C 1.52995 * 109.47254 * 300.00318 * 17 16 15 20 20 C 1.52993 * 109.47327 * 60.00090 * 19 17 16 21 21 C 1.52995 * 109.47166 * 299.99814 * 15 14 13 22 22 H 1.08994 * 109.47577 * 300.00360 * 1 2 3 23 23 H 1.09000 * 109.47013 * 60.00571 * 1 2 3 24 24 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.00906 * 111.00314 * 174.12249 * 3 2 1 26 26 H 1.00904 * 111.00393 * 298.07352 * 3 2 1 27 27 H 0.96999 * 119.99320 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46677 * 61.08193 * 12 2 1 29 29 H 1.09006 * 109.47394 * 60.00203 * 13 12 2 30 30 H 1.09003 * 109.47271 * 299.99640 * 14 13 12 31 31 H 1.09001 * 109.46746 * 180.02562 * 14 13 12 32 32 H 1.09006 * 109.46746 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.46384 * 180.02562 * 16 15 14 34 34 H 1.08993 * 109.47228 * 60.00197 * 16 15 14 35 35 H 1.09000 * 109.46677 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47589 * 180.02562 * 18 13 12 37 37 H 1.08998 * 109.47519 * 59.99975 * 18 13 12 38 38 H 1.08997 * 109.47349 * 299.99891 * 19 17 16 39 39 H 1.09006 * 109.47138 * 180.02562 * 19 17 16 40 40 H 1.09005 * 109.47520 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47539 * 300.00202 * 21 15 14 42 42 H 1.08997 * 109.47349 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6128 -1.6158 1.1322 6 6 1.7508 -0.2044 2.4819 7 7 1.0435 0.8979 2.6015 8 14 2.3728 -1.0853 4.0072 9 1 3.1373 -2.2929 3.6041 10 1 3.2567 -0.1750 4.7786 11 1 1.2193 -1.4881 4.8512 12 6 2.0401 -0.7214 -1.2491 13 6 1.5081 -2.1558 -1.2627 14 6 2.0176 -2.8769 -2.5122 15 6 3.5474 -2.9004 -2.4993 16 6 4.0355 -3.6373 -1.2504 17 6 3.5260 -2.9161 -0.0010 18 6 1.9957 -2.8924 -0.0136 19 6 4.0580 -1.4817 0.0126 20 6 3.5698 -0.7449 -1.2362 21 6 4.0794 -1.4660 -2.4857 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0237 1.4136 0.0965 26 1 1.7222 1.8737 -0.8312 27 1 0.8451 1.2536 3.4819 28 1 1.6926 -0.1965 -2.1390 29 1 0.4182 -2.1391 -1.2724 30 1 1.6697 -2.3520 -3.4020 31 1 1.6382 -3.8987 -2.5221 32 1 3.9104 -3.4146 -3.3893 33 1 5.1253 -3.6536 -1.2411 34 1 3.6566 -4.6592 -1.2601 35 1 3.8734 -3.4414 0.8887 36 1 1.6171 -3.9145 -0.0235 37 1 1.6324 -2.3786 0.8763 38 1 5.1478 -1.4984 0.0218 39 1 3.6953 -0.9681 0.9030 40 1 3.9485 0.2773 -1.2263 41 1 3.7316 -0.9410 -3.3754 42 1 5.1692 -1.4827 -2.4761 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217144431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:14 Heat of formation + Delta-G solvation = 31.006628 kcal Electronic energy + Delta-G solvation = -21084.834357 eV Core-core repulsion = 18451.301991 eV Total energy + Delta-G solvation = -2633.532366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.84048 -37.36549 -34.22498 -33.38715 -33.33764 -31.81782 -29.04767 -27.56200 -26.45572 -26.05924 -22.58983 -22.01245 -21.91839 -20.45026 -18.45751 -18.07215 -16.38007 -16.06627 -15.48518 -15.31076 -15.06536 -14.82588 -14.64610 -14.14026 -13.94403 -13.76645 -13.63301 -13.17972 -13.11724 -12.94482 -12.76698 -12.41752 -12.32441 -12.01203 -11.66867 -11.55684 -11.49823 -11.45807 -11.26941 -11.17264 -10.46794 -10.25601 -10.22947 -10.09497 -9.08171 -8.51095 -7.71252 -5.74873 1.46189 1.54202 1.58148 2.58828 3.44405 3.82775 3.83597 3.91238 4.40172 4.46812 4.53988 4.57030 4.60252 4.62311 4.68585 4.69373 4.72988 4.81985 4.96258 5.05564 5.11213 5.14904 5.19851 5.26081 5.27626 5.30096 5.32982 5.39866 5.41634 5.47616 5.57430 5.62578 5.87039 5.87552 5.89439 6.02951 6.05973 6.13192 6.36547 6.58901 6.95316 7.37838 7.54920 7.79616 9.27140 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.011443 C = 0.009802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.757558 B = 2446.414859 C = 2855.855492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.244 3.756 3 N -0.821 5.821 4 C -0.548 4.548 5 H 0.151 0.849 6 C 0.034 3.966 7 N -0.870 5.870 8 Si 0.907 3.093 9 H -0.257 1.257 10 H -0.296 1.296 11 H -0.296 1.296 12 C -0.088 4.088 13 C -0.062 4.062 14 C -0.106 4.106 15 C -0.079 4.079 16 C -0.101 4.101 17 C -0.080 4.080 18 C -0.161 4.161 19 C -0.166 4.166 20 C -0.060 4.060 21 C -0.106 4.106 22 H 0.049 0.951 23 H 0.009 0.991 24 H 0.033 0.967 25 H 0.320 0.680 26 H 0.300 0.700 27 H 0.241 0.759 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.126 0.874 38 H 0.033 0.967 39 H 0.132 0.868 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -7.255 -9.071 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.153 3.847 3 N -0.348 5.348 4 C -0.584 4.584 5 H 0.168 0.832 6 C -0.169 4.169 7 N -0.507 5.507 8 Si 0.735 3.265 9 H -0.181 1.181 10 H -0.223 1.223 11 H -0.223 1.223 12 C -0.109 4.109 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.097 4.097 16 C -0.138 4.138 17 C -0.098 4.098 18 C -0.197 4.197 19 C -0.202 4.202 20 C -0.079 4.079 21 C -0.143 4.143 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.143 0.857 38 H 0.052 0.948 39 H 0.149 0.851 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.419 -7.028 -8.271 11.719 hybrid contribution 0.501 -0.266 0.226 0.611 sum 4.920 -7.294 -8.045 11.922 Atomic orbital electron populations 1.21676 0.99079 0.98272 0.98641 1.18369 0.90578 0.84541 0.91178 1.59010 1.15430 1.17782 1.42615 1.23224 1.33460 1.11908 0.89850 0.83246 1.25598 0.95734 0.95086 1.00474 1.70288 1.38252 1.20816 1.21386 0.86305 0.77929 0.79614 0.82611 1.18120 1.22335 1.22298 1.21756 0.95132 0.96065 0.97937 1.20776 0.98023 0.94574 0.94699 1.21579 0.95600 0.99889 0.97324 1.20990 0.95210 0.95715 0.97779 1.21499 0.99746 0.98251 0.94315 1.20872 0.95859 0.96081 0.97001 1.22846 0.95266 0.98777 1.02825 1.22969 0.97592 0.96352 1.03261 1.20736 0.94903 0.97433 0.94799 1.21558 0.99691 0.95764 0.97294 0.93239 0.97182 0.94786 0.86766 0.88969 0.94945 0.94997 0.93363 0.92614 0.92071 0.90577 0.92163 0.92108 0.93223 0.94537 0.85720 0.94810 0.85107 0.93620 0.92629 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.21 71.98 0.59 -4.91 16 2 C 0.24 10.69 0.36 2.79 0.00 10.70 16 3 N -0.82 -36.62 7.88 -154.53 -1.22 -37.84 16 4 C -0.55 -25.52 2.89 25.60 0.07 -25.45 16 5 H 0.15 6.55 1.47 -2.91 0.00 6.55 16 6 C 0.03 1.72 5.23 84.65 0.44 2.16 16 7 N -0.87 -48.14 10.89 21.45 0.23 -47.91 16 8 Si 0.91 41.13 29.54 68.60 2.03 43.15 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 12 C -0.09 -3.27 1.66 -10.80 -0.02 -3.29 16 13 C -0.06 -2.16 2.34 -10.80 -0.03 -2.18 16 14 C -0.11 -3.06 5.19 30.60 0.16 -2.91 16 15 C -0.08 -2.11 3.19 -10.79 -0.03 -2.15 16 16 C -0.10 -2.81 5.19 30.59 0.16 -2.65 16 17 C -0.08 -2.70 2.67 -10.78 -0.03 -2.73 16 18 C -0.16 -5.87 4.78 30.61 0.15 -5.72 16 19 C -0.17 -6.00 4.78 30.59 0.15 -5.85 16 20 C -0.06 -2.06 2.41 -10.79 -0.03 -2.08 16 21 C -0.11 -3.01 5.19 30.59 0.16 -2.85 16 22 H 0.05 2.63 6.31 -2.39 -0.02 2.61 16 23 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.03 1.51 6.41 -2.39 -0.02 1.49 16 25 H 0.32 13.98 7.40 -89.69 -0.66 13.32 16 26 H 0.30 12.30 8.99 -89.69 -0.81 11.50 16 27 H 0.24 13.23 8.31 -92.71 -0.77 12.46 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.79 6.41 -2.38 -0.02 1.77 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.13 5.36 3.96 -9.53 -0.04 5.33 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.13 5.60 3.83 -18.92 -0.07 5.53 16 40 H 0.05 1.62 6.83 -2.38 -0.02 1.60 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -52.51 281.37 2.26 -50.25 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.53 Total: 42.27 kcal Atomic # 6 Polarization: -51.66 SS G_CDS: 1.75 Total: -49.92 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -0.98 Total: -85.75 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -52.51 2.26 -50.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217144431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.255 kcal (2) G-P(sol) polarization free energy of solvation -52.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds