Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38382 * 120.00083 * 74.72794 * 12 9 7 14 14 F 1.35095 * 120.00195 * 359.97438 * 13 12 9 15 15 C 1.38650 * 119.99954 * 179.76607 * 13 12 9 16 16 F 1.35092 * 120.00137 * 180.22766 * 15 13 12 17 17 C 1.38388 * 119.99608 * 0.50188 * 15 13 12 18 18 C 1.38391 * 120.00299 * 359.75218 * 17 15 13 19 19 F 1.35105 * 120.00178 * 179.97438 * 18 17 15 20 20 C 1.38396 * 119.99416 * 254.99717 * 12 9 7 21 21 F 1.35100 * 120.00333 * 0.02562 * 20 12 9 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 24 24 H 1.07997 * 119.99716 * 179.72422 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8711 -0.6785 0.8962 11 8 3.9928 -0.5228 -1.1604 12 6 4.0138 -2.6149 0.0107 13 6 3.9516 -3.3748 -1.1442 14 9 3.4402 -2.8431 -2.2759 15 6 4.4182 -4.6805 -1.1409 16 9 4.3618 -5.4208 -2.2695 17 6 4.9365 -5.2270 0.0200 18 6 4.9938 -4.4688 1.1763 19 9 5.4993 -5.0026 2.3098 20 6 4.5321 -3.1615 1.1717 21 9 4.5873 -2.4216 2.3007 22 1 -0.4849 0.8400 0.0004 23 1 3.7108 -0.9280 -1.9919 24 1 5.2958 -6.2455 0.0238 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218452332.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = -200.087379 kcal Electronic energy + Delta-G solvation = -18450.030869 eV Core-core repulsion = 14635.942523 eV Total energy + Delta-G solvation = -3814.088345 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.036 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.44612 -49.40390 -48.48188 -48.46129 -38.68146 -36.10328 -32.47829 -31.27553 -29.62656 -27.48785 -24.06730 -22.84923 -21.34552 -18.49807 -18.15523 -17.95708 -17.42637 -16.56923 -16.34316 -15.75730 -15.44229 -15.21560 -14.98778 -14.84224 -14.68752 -14.63849 -14.13560 -13.40506 -13.14701 -13.01336 -12.38692 -11.92013 -11.86834 -11.45289 -11.07981 -10.87813 -10.13771 -9.55283 -9.18389 -8.81688 -8.60263 -8.48980 -6.30252 -4.46254 0.67443 0.79384 3.05815 3.35647 3.39350 3.49735 3.52614 3.87724 4.00279 4.35058 4.44740 4.50381 4.87873 4.99545 5.34785 5.55588 5.59354 5.64505 5.78762 5.98666 6.66934 6.88443 7.20731 8.05416 8.53870 8.72729 9.27977 10.78918 Molecular weight = 250.04amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.009293 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.998642 B = 3012.436370 C = 3636.229530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.090 3.910 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.226 3.774 10 H 0.089 0.911 11 O -0.579 6.579 12 C -0.083 4.083 13 C 0.099 3.901 14 F -0.105 7.105 15 C 0.085 3.915 16 F -0.121 7.121 17 C -0.154 4.154 18 C 0.085 3.915 19 F -0.121 7.121 20 C 0.091 3.909 21 F -0.112 7.112 22 H 0.270 0.730 23 H 0.367 0.633 24 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -8.506 -0.419 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.117 4.117 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.599 4.599 8 H 0.097 0.903 9 C 0.168 3.832 10 H 0.107 0.893 11 O -0.389 6.389 12 C -0.086 4.086 13 C 0.079 3.921 14 F -0.084 7.084 15 C 0.065 3.935 16 F -0.099 7.099 17 C -0.174 4.174 18 C 0.064 3.936 19 F -0.100 7.100 20 C 0.070 3.930 21 F -0.090 7.090 22 H 0.080 0.920 23 H 0.218 0.782 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.853 -8.023 0.017 12.706 hybrid contribution -0.023 0.289 -0.340 0.447 sum 9.829 -7.733 -0.323 12.511 Atomic orbital electron populations 1.69915 1.06575 1.27962 1.46986 1.24949 0.94763 0.99874 0.92065 0.86288 0.79365 0.81508 0.78948 1.19967 1.22746 1.18999 1.21228 0.87690 0.95569 1.55420 0.90324 1.19063 0.94961 0.81500 0.87628 0.89312 1.86451 1.77529 1.57898 1.17012 1.21045 0.96033 1.01708 0.89804 1.17034 1.00645 0.90354 0.84096 1.91444 1.84208 1.85367 1.47336 1.17158 1.03920 0.88628 0.83821 1.91542 1.94377 1.75766 1.48216 1.20583 1.04877 1.02139 0.89790 1.17141 1.01926 0.90833 0.83662 1.91542 1.84700 1.85870 1.47855 1.17083 1.03331 0.88499 0.84042 1.91552 1.94099 1.75817 1.47549 0.92011 0.78180 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.43 0.77 -25.07 14 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 14 3 Si 0.91 22.36 26.18 -169.99 -4.45 17.91 14 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 14 5 H -0.30 -7.27 7.11 56.52 0.40 -6.86 14 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 14 7 C -0.56 -15.17 9.23 -34.44 -0.32 -15.49 14 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 14 9 C 0.23 5.23 2.37 -29.03 -0.07 5.16 14 10 H 0.09 2.11 6.32 -51.93 -0.33 1.78 14 11 O -0.58 -13.12 10.95 -35.23 -0.39 -13.50 14 12 C -0.08 -1.63 4.92 -104.51 -0.51 -2.15 14 13 C 0.10 1.78 7.03 -39.38 -0.28 1.50 14 14 F -0.11 -1.98 14.38 2.25 0.03 -1.95 14 15 C 0.09 1.27 7.30 -39.37 -0.29 0.99 14 16 F -0.12 -1.74 17.18 2.25 0.04 -1.71 14 17 C -0.15 -1.99 10.00 -39.47 -0.39 -2.38 14 18 C 0.08 1.26 7.30 -39.37 -0.29 0.97 14 19 F -0.12 -1.73 17.18 2.25 0.04 -1.69 14 20 C 0.09 1.62 7.25 -39.37 -0.29 1.33 14 21 F -0.11 -2.09 16.18 2.25 0.04 -2.05 14 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 14 23 H 0.37 7.65 6.36 45.56 0.29 7.94 14 24 H 0.16 1.54 8.06 -52.49 -0.42 1.11 14 LS Contribution 234.65 15.07 3.54 3.54 Total: -1.00 -28.64 234.65 -2.96 -31.60 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -0.05 Total: 0.57 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.53 Total: -7.64 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.77 Total: -25.07 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.39 Total: -13.50 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.15 Total: -7.40 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.45 Total: 17.91 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.64 -2.96 -31.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218452332.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.492 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds