Wall clock time and date at job start Mon Mar 30 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39506 * 120.11444 * 113.64854 * 3 2 1 5 5 C 1.38795 * 119.76207 * 179.97438 * 4 3 2 6 6 N 1.39308 * 119.99572 * 179.97438 * 5 4 3 7 7 N 1.40105 * 119.99664 * 180.02562 * 6 5 4 8 8 N 1.28993 * 120.00054 * 179.72799 * 7 6 5 9 9 C 1.33184 * 120.00219 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99831 * 359.97438 * 9 8 7 11 11 C 1.40347 * 120.00094 * 179.97438 * 9 8 7 12 12 N 1.30724 * 119.99808 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00056 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00005 * 13 11 9 15 15 H 1.48499 * 109.47218 * 209.99865 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99696 * 13 11 9 17 17 C 1.39250 * 119.99964 * 0.25531 * 5 4 3 18 18 C 1.38096 * 120.23349 * 359.48939 * 17 5 4 19 19 C 1.38225 * 120.23658 * 0.51265 * 18 17 5 20 20 Cl 1.73604 * 119.99896 * 179.72376 * 19 18 17 21 21 H 1.07993 * 120.12014 * 0.02562 * 4 3 2 22 22 H 0.96996 * 120.00039 * 359.72737 * 6 5 4 23 23 H 0.97004 * 120.00347 * 180.02562 * 12 11 9 24 24 H 1.07998 * 119.87888 * 179.74383 * 17 5 4 25 25 H 1.07997 * 119.87676 * 180.25660 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 0.4850 -1.1054 5 6 4.6557 0.4827 -1.0974 6 7 5.3593 0.9648 -2.1988 7 7 6.7604 0.9619 -2.1910 8 7 7.4120 1.4034 -3.2129 9 6 8.7438 1.4012 -3.2053 10 1 9.2782 1.0302 -2.3432 11 6 9.4527 1.8811 -4.3174 12 7 10.7600 1.8784 -4.3100 13 14 8.5284 2.5235 -5.8081 14 1 8.2829 3.9794 -5.6488 15 1 9.3374 2.2888 -7.0311 16 1 7.2302 1.8129 -5.9296 17 6 5.3447 -0.0069 0.0092 18 6 4.6520 -0.4815 1.1056 19 6 3.2698 -0.4837 1.1080 20 17 2.4052 -1.0885 2.4866 21 1 2.7315 0.8612 -1.9640 22 1 4.8793 1.2983 -2.9729 23 1 11.2500 2.2104 -5.0785 24 1 6.4247 -0.0116 0.0117 25 1 5.1922 -0.8560 1.9624 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221985580.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:14 Heat of formation + Delta-G solvation = 76.472830 kcal Electronic energy + Delta-G solvation = -14195.640283 eV Core-core repulsion = 11428.323106 eV Total energy + Delta-G solvation = -2767.317177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.032 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49362 -38.02580 -37.45671 -37.31292 -35.75071 -34.38650 -32.32937 -30.50655 -27.92774 -25.12250 -23.49574 -22.68725 -19.67654 -19.52618 -18.39650 -17.42259 -16.81305 -16.47381 -15.89257 -15.40416 -14.93591 -14.62627 -14.51021 -14.30463 -14.14516 -13.88737 -13.77168 -13.19799 -13.18194 -12.87255 -12.47019 -12.44518 -11.94966 -11.77901 -11.46491 -10.76592 -10.00779 -9.40919 -9.05837 -8.71008 -6.70216 -0.24638 0.35414 1.02119 1.20166 1.36932 1.52684 1.53284 1.68192 2.00098 2.20881 2.25336 2.85837 2.85974 3.17245 3.85379 4.15119 4.25426 4.40867 4.60138 4.82829 4.98668 5.26811 5.33904 5.50951 5.62464 5.72273 6.21502 6.35441 6.66969 7.24244 7.82321 8.47006 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.004166 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.634931 B = 6718.855512 C = 7325.634905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.280 3.720 3 C 0.026 3.974 4 C -0.152 4.152 5 C 0.249 3.751 6 N -0.577 5.577 7 N -0.279 5.279 8 N -0.258 5.258 9 C -0.209 4.209 10 H 0.052 0.948 11 C 0.066 3.934 12 N -0.770 5.770 13 Si 0.998 3.002 14 H -0.257 1.257 15 H -0.250 1.250 16 H -0.263 1.263 17 C -0.149 4.149 18 C -0.049 4.049 19 C -0.073 4.073 20 Cl -0.071 7.071 21 H 0.150 0.850 22 H 0.370 0.630 23 H 0.321 0.679 24 H 0.129 0.871 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -1.486 3.330 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.035 4.035 3 C 0.021 3.979 4 C -0.179 4.179 5 C 0.137 3.863 6 N -0.288 5.288 7 N -0.256 5.256 8 N -0.121 5.121 9 C -0.385 4.385 10 H 0.070 0.930 11 C -0.163 4.163 12 N -0.397 5.397 13 Si 0.816 3.184 14 H -0.182 1.182 15 H -0.174 1.174 16 H -0.187 1.187 17 C -0.174 4.174 18 C -0.068 4.068 19 C -0.105 4.105 20 Cl -0.043 7.043 21 H 0.167 0.833 22 H 0.206 0.794 23 H 0.133 0.867 24 H 0.147 0.853 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.170 -1.543 3.461 9.006 hybrid contribution 0.403 0.298 -0.642 0.814 sum -7.767 -1.245 2.820 8.356 Atomic orbital electron populations 1.81187 1.12560 1.09512 1.08627 1.25536 0.92454 0.92868 0.92676 1.15279 0.83438 1.04200 0.95002 1.20396 0.91033 1.07264 0.99219 1.17467 0.89664 0.92098 0.87089 1.45935 1.03577 1.63359 1.15885 1.79381 0.87860 1.39430 1.18950 1.68414 1.10511 1.07649 1.25558 1.19989 0.85790 1.30906 1.01840 0.92996 1.26818 0.95491 0.91881 1.02123 1.69363 1.08793 1.28104 1.33411 0.84823 0.79219 0.79424 0.74886 1.18160 1.17419 1.18711 1.20860 1.00810 1.03033 0.92648 1.20835 0.90610 0.96859 0.98537 1.20502 0.92368 1.08140 0.89533 1.98347 1.76902 1.86693 1.42319 0.83267 0.79367 0.86663 0.85348 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.75 18.54 19.00 0.35 -13.40 15 2 C 0.28 7.90 14.37 88.33 1.27 9.17 15 3 C 0.03 0.70 5.73 -21.35 -0.12 0.57 15 4 C -0.15 -4.18 9.60 22.71 0.22 -3.96 15 5 C 0.25 8.25 6.71 38.33 0.26 8.51 15 6 N -0.58 -22.73 6.64 -51.46 -0.34 -23.08 15 7 N -0.28 -13.36 11.20 37.02 0.41 -12.94 15 8 N -0.26 -12.82 9.81 -55.43 -0.54 -13.36 15 9 C -0.21 -10.53 10.64 85.00 0.90 -9.62 15 10 H 0.05 2.87 8.06 -2.91 -0.02 2.84 15 11 C 0.07 2.94 5.53 85.37 0.47 3.41 15 12 N -0.77 -33.52 13.92 21.90 0.30 -33.21 15 13 Si 1.00 35.32 28.55 68.60 1.96 37.27 15 14 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 15 H -0.25 -7.71 7.11 99.48 0.71 -7.01 15 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 17 C -0.15 -4.72 9.50 22.48 0.21 -4.50 15 18 C -0.05 -1.25 9.80 22.23 0.22 -1.03 15 19 C -0.07 -1.90 6.35 22.65 0.14 -1.75 15 20 Cl -0.07 -1.73 28.01 -2.72 -0.08 -1.81 15 21 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 22 H 0.37 13.46 8.83 -213.32 -1.88 11.57 15 23 H 0.32 11.81 8.29 -92.71 -0.77 11.04 15 24 H 0.13 4.56 7.34 -2.91 -0.02 4.54 15 25 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 Total: -1.00 -52.49 264.89 5.02 -47.47 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -0.62 Total: 12.26 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 3.57 Total: 0.79 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: 0.19 Total: -95.99 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 1.96 Total: 37.27 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -52.49 5.02 -47.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221985580.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.942 kcal (2) G-P(sol) polarization free energy of solvation -52.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds