Wall clock time and date at job start Mon Mar 30 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30551 * 1 3 3 Si 1.86805 * 119.99869 * 2 1 4 4 H 1.48495 * 109.47434 * 240.00198 * 3 2 1 5 5 H 1.48508 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99904 * 3 2 1 7 7 C 1.40295 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.41368 * 120.00225 * 0.02562 * 7 2 1 10 10 O 1.21996 * 119.99603 * 359.72280 * 9 7 2 11 11 C 1.47056 * 120.00555 * 180.02562 * 9 7 2 12 12 C 1.39599 * 123.16745 * 359.72246 * 11 9 7 13 13 C 1.33238 * 113.94462 * 179.97438 * 12 11 9 14 14 Cl 1.73603 * 124.87154 * 179.97438 * 13 12 11 15 15 S 1.75646 * 110.26026 * 359.97438 * 13 12 11 16 16 C 1.37484 * 123.17075 * 179.43274 * 11 9 7 17 17 Cl 1.73597 * 124.88129 * 359.97438 * 16 11 9 18 18 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 19 19 H 1.08000 * 123.02625 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 3.0932 1.6966 -1.2125 5 1 1.2743 2.7465 -0.0006 6 1 3.0932 1.6965 1.2125 7 6 2.0071 -1.2149 -0.0005 8 1 3.0871 -1.2149 -0.0001 9 6 1.3004 -2.4393 -0.0016 10 8 0.0804 -2.4394 0.0030 11 6 2.0356 -3.7128 -0.0016 12 6 3.4295 -3.7900 -0.0063 13 6 3.9022 -5.0357 -0.0049 14 17 5.5859 -5.4584 -0.0103 15 16 2.5773 -6.1889 0.0032 16 6 1.4152 -4.9397 0.0087 17 17 -0.3036 -5.1828 0.0239 18 1 -0.4850 0.8400 -0.0004 19 1 4.0672 -2.9184 -0.0106 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236034829.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:52 Heat of formation + Delta-G solvation = -23.110022 kcal Electronic energy + Delta-G solvation = -11582.414048 eV Core-core repulsion = 9050.680059 eV Total energy + Delta-G solvation = -2531.733989 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 249.936 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.10299 -36.62536 -35.93405 -35.26376 -32.71024 -28.42075 -27.47185 -23.90372 -20.89399 -18.88890 -17.94616 -16.00133 -15.61142 -14.71237 -13.89379 -13.81611 -13.45890 -12.73850 -12.49126 -12.22143 -11.63635 -11.58337 -11.30017 -10.99574 -10.59001 -10.44089 -10.41889 -10.28869 -10.15407 -9.01737 -8.25194 -7.80961 -7.51203 -6.36231 -4.97410 1.03742 1.17510 2.03705 2.39372 2.71633 2.95779 3.07414 3.09950 3.11835 3.96481 4.40484 5.69061 5.70112 5.83058 6.26894 6.48733 6.83749 7.15984 7.94651 8.71293 8.73925 10.24046 10.45400 Molecular weight = 249.94amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.008972 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.358857 B = 3120.221595 C = 4359.720413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.072 0.928 9 C 0.398 3.602 10 O -0.519 6.519 11 C -0.105 4.105 12 C -0.067 4.067 13 C -0.179 4.179 14 Cl -0.028 7.028 15 S 0.200 5.800 16 C -0.161 4.161 17 Cl 0.009 6.991 18 H 0.276 0.724 19 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -7.924 -0.001 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.540 4.540 8 H 0.091 0.909 9 C 0.291 3.709 10 O -0.408 6.408 11 C -0.120 4.120 12 C -0.099 4.099 13 C -0.322 4.322 14 Cl 0.000 7.000 15 S 0.461 5.539 16 C -0.306 4.306 17 Cl 0.038 6.962 18 H 0.087 0.913 19 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.122 -9.528 0.005 11.325 hybrid contribution 0.723 2.253 -0.005 2.367 sum 6.845 -7.275 0.000 9.989 Atomic orbital electron populations 1.69952 1.07497 1.28357 1.30031 1.25963 0.94669 1.00960 0.92821 0.86411 0.80102 0.80458 0.79921 1.18849 1.20222 1.18843 1.20747 0.94840 0.91430 1.47033 0.90933 1.17509 0.88568 0.84461 0.80375 1.90624 1.14114 1.87690 1.48331 1.21329 0.92800 0.97814 1.00050 1.20389 0.94942 0.96094 0.98500 1.25123 0.89544 0.97892 1.19639 1.98323 1.11066 1.93101 1.97476 1.82736 0.91837 1.06450 1.72848 1.25461 0.91850 0.98050 1.15226 1.98349 1.05365 1.95930 1.96605 0.91311 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.40 11.72 55.56 0.65 -19.75 13 2 C 0.08 2.08 5.50 -17.32 -0.10 1.98 13 3 Si 0.91 18.74 29.56 -169.99 -5.03 13.71 13 4 H -0.26 -5.32 7.11 56.52 0.40 -4.91 13 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 13 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 13 7 C -0.51 -13.48 8.91 -37.62 -0.34 -13.82 13 8 H 0.07 1.73 6.39 -52.48 -0.34 1.39 13 9 C 0.40 10.90 6.90 -34.82 -0.24 10.66 13 10 O -0.52 -15.79 13.47 4.92 0.07 -15.72 13 11 C -0.10 -2.39 5.85 -106.09 -0.62 -3.01 13 12 C -0.07 -1.29 9.53 -40.82 -0.39 -1.68 13 13 C -0.18 -2.99 7.04 28.99 0.20 -2.78 13 14 Cl -0.03 -0.39 29.28 -51.86 -1.52 -1.91 13 15 S 0.20 3.21 23.07 -107.50 -2.48 0.73 13 16 C -0.16 -3.32 6.94 30.46 0.21 -3.10 13 17 Cl 0.01 0.18 27.23 -51.86 -1.41 -1.23 13 18 H 0.28 6.94 8.29 -40.82 -0.34 6.60 13 19 H 0.16 2.91 6.76 -52.49 -0.35 2.55 13 LS Contribution 227.76 15.07 3.43 3.43 Total: -1.00 -29.59 227.76 -7.37 -36.97 By element: Atomic # 1 Polarization: -4.65 SS G_CDS: 0.18 Total: -4.47 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.27 Total: -11.76 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.65 Total: -19.75 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.07 Total: -15.72 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.48 Total: 0.73 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -2.93 Total: -3.14 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.59 -7.37 -36.97 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236034829.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.856 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds