Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86803 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47491 * 239.99864 * 3 2 1 5 5 H 1.48498 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99970 * 3 2 1 7 7 C 1.40181 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.39872 * 119.99848 * 0.27849 * 7 2 1 10 10 N 1.31581 * 125.29712 * 179.71913 * 9 7 2 11 11 C 1.31230 * 115.82256 * 179.97438 * 10 9 7 12 12 C 1.48223 * 122.47533 * 180.02562 * 11 10 9 13 13 C 1.39478 * 120.53528 * 184.97742 * 12 11 10 14 14 N 1.31689 * 120.63088 * 179.97438 * 13 12 11 15 15 C 1.31916 * 121.88917 * 0.02562 * 14 13 12 16 16 C 1.38538 * 121.02167 * 359.97438 * 15 14 13 17 17 F 1.35105 * 120.37890 * 180.02562 * 16 15 14 18 18 C 1.38629 * 119.24174 * 359.74024 * 16 15 14 19 19 C 1.37222 * 115.05608 * 0.02562 * 11 10 9 20 20 S 1.71000 * 109.07955 * 359.74902 * 19 11 10 21 21 H 0.97005 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.68385 * 359.95277 * 13 12 11 23 23 H 1.08007 * 119.49170 * 180.02562 * 15 14 13 24 24 H 1.08001 * 120.85603 * 180.25686 * 18 16 15 25 25 H 1.08000 * 125.46057 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0950 1.6965 -1.2124 5 1 1.2763 2.7465 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3089 -2.4253 -0.0048 10 7 1.8589 -3.6207 -0.0101 11 6 1.0246 -4.6337 -0.0141 12 6 1.4839 -6.0429 -0.0197 13 6 0.5656 -7.0871 -0.1280 14 7 0.9717 -8.3398 -0.1337 15 6 2.2480 -8.6592 -0.0380 16 6 3.2224 -7.6806 0.0729 17 9 4.5260 -8.0223 0.1696 18 6 2.8451 -6.3467 0.0775 19 6 -0.3044 -4.2920 -0.0126 20 16 -0.4434 -2.5878 0.0013 21 1 -0.4850 0.8401 0.0004 22 1 -0.4885 -6.8662 -0.2076 23 1 2.5380 -9.6995 -0.0471 24 1 3.5834 -5.5625 0.1585 25 1 -1.1302 -4.9880 -0.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236272745.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 2.671130 kcal Electronic energy + Delta-G solvation = -14723.427095 eV Core-core repulsion = 11935.033380 eV Total energy + Delta-G solvation = -2788.393714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.027 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.72903 -39.72007 -37.49305 -34.32756 -32.19702 -31.00133 -28.73922 -26.55136 -24.16849 -23.21818 -21.77186 -18.92168 -17.92708 -17.02932 -16.76051 -16.33414 -15.54709 -15.47064 -15.18938 -14.00856 -13.58872 -13.42054 -13.14755 -12.76652 -12.65342 -12.37700 -11.89567 -11.83102 -11.50228 -10.72581 -10.59626 -10.00826 -9.79807 -9.42418 -9.35702 -8.77970 -8.07042 -7.98621 -7.22886 -7.15588 -4.90070 1.05629 1.38140 2.42234 2.85727 2.89970 2.95351 3.30621 3.57442 3.71030 3.79727 4.28130 4.31302 4.66406 5.03732 5.07483 5.07860 5.32391 5.51893 6.03507 6.16797 6.44690 6.47773 6.68518 6.83821 7.05097 7.27236 7.74560 8.06242 8.16981 8.21713 9.50574 9.66733 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.005711 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.612546 B = 4902.018737 C = 5637.446844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.055 3.945 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.372 4.372 8 H 0.105 0.895 9 C 0.202 3.798 10 N -0.591 5.591 11 C 0.127 3.873 12 C -0.004 4.004 13 C 0.090 3.910 14 N -0.459 5.459 15 C 0.048 3.952 16 C 0.044 3.956 17 F -0.137 7.137 18 C -0.094 4.094 19 C -0.439 4.439 20 S 0.135 5.865 21 H 0.301 0.699 22 H 0.163 0.837 23 H 0.160 0.840 24 H 0.154 0.846 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 -3.973 0.057 4.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.414 4.414 8 H 0.122 0.878 9 C -0.051 4.051 10 N -0.312 5.312 11 C -0.013 4.013 12 C -0.008 4.008 13 C -0.070 4.070 14 N -0.166 5.166 15 C -0.111 4.111 16 C 0.023 3.977 17 F -0.115 7.115 18 C -0.121 4.121 19 C -0.584 4.584 20 S 0.397 5.603 21 H 0.114 0.886 22 H 0.180 0.820 23 H 0.177 0.823 24 H 0.172 0.828 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.005 -3.781 -0.001 3.781 hybrid contribution 1.373 0.305 0.081 1.408 sum 1.367 -3.476 0.080 3.736 Atomic orbital electron populations 1.68720 1.07756 1.31245 1.33139 1.26194 0.95136 1.02794 0.92612 0.85719 0.79547 0.77553 0.80494 1.18346 1.19765 1.18345 1.18979 0.95907 0.87318 1.39243 0.87756 1.23799 0.91523 0.93878 0.95894 1.67216 1.34605 0.97085 1.32324 1.18413 0.88827 0.90814 1.03258 1.19426 0.92105 0.93383 0.95933 1.22913 1.00476 0.86570 0.97008 1.67640 1.16323 1.21138 1.11519 1.22710 0.87937 0.99343 1.01109 1.18768 0.79143 0.94408 1.05420 1.91483 1.33408 1.92869 1.93785 1.21846 0.97532 0.94729 0.97986 1.26515 0.98971 1.04897 1.28063 1.84299 1.11162 0.93471 1.71355 0.88560 0.82001 0.82287 0.82802 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.71 10.64 55.56 0.59 -17.12 15 2 C 0.06 1.23 5.50 -17.29 -0.10 1.14 15 3 Si 0.94 16.62 29.56 -169.99 -5.03 11.60 15 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 5 H -0.27 -4.63 7.11 56.52 0.40 -4.22 15 6 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 7 C -0.37 -9.16 9.44 -38.24 -0.36 -9.53 15 8 H 0.10 2.47 7.85 -52.49 -0.41 2.06 15 9 C 0.20 5.26 7.11 -17.05 -0.12 5.14 15 10 N -0.59 -15.22 10.10 -9.50 -0.10 -15.31 15 11 C 0.13 2.98 6.65 -84.39 -0.56 2.42 15 12 C 0.00 -0.07 5.89 -104.75 -0.62 -0.69 15 13 C 0.09 1.59 10.65 -17.15 -0.18 1.41 15 14 N -0.46 -7.72 10.34 -12.87 -0.13 -7.85 15 15 C 0.05 0.73 11.16 -17.40 -0.19 0.53 15 16 C 0.04 0.73 7.34 -39.33 -0.29 0.44 15 17 F -0.14 -2.15 17.28 2.25 0.04 -2.11 15 18 C -0.09 -1.76 9.74 -38.85 -0.38 -2.14 15 19 C -0.44 -9.97 10.42 30.36 0.32 -9.65 15 20 S 0.14 3.24 20.12 -107.50 -2.16 1.08 15 21 H 0.30 6.11 8.29 -40.82 -0.34 5.77 15 22 H 0.16 2.61 6.65 -52.49 -0.35 2.26 15 23 H 0.16 1.89 8.06 -52.48 -0.42 1.47 15 24 H 0.15 3.00 7.77 -52.49 -0.41 2.59 15 25 H 0.14 2.72 6.90 -52.49 -0.36 2.36 15 LS Contribution 248.79 15.07 3.75 3.75 Total: -1.00 -26.28 248.79 -6.61 -32.89 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -1.09 Total: 4.01 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.48 Total: -10.93 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.36 Total: -40.28 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.16 Total: 1.08 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -26.28 -6.61 -32.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236272745.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.562 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds