Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86803 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47491 * 239.99864 * 3 2 1 5 5 H 1.48498 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99970 * 3 2 1 7 7 C 1.40181 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.39872 * 119.99848 * 0.27849 * 7 2 1 10 10 N 1.31581 * 125.29712 * 179.71913 * 9 7 2 11 11 C 1.31230 * 115.82256 * 179.97438 * 10 9 7 12 12 C 1.48223 * 122.47533 * 180.02562 * 11 10 9 13 13 C 1.39478 * 120.53528 * 184.97742 * 12 11 10 14 14 N 1.31689 * 120.63088 * 179.97438 * 13 12 11 15 15 C 1.31916 * 121.88917 * 0.02562 * 14 13 12 16 16 C 1.38538 * 121.02167 * 359.97438 * 15 14 13 17 17 F 1.35105 * 120.37890 * 180.02562 * 16 15 14 18 18 C 1.38629 * 119.24174 * 359.74024 * 16 15 14 19 19 C 1.37222 * 115.05608 * 0.02562 * 11 10 9 20 20 S 1.71000 * 109.07955 * 359.74902 * 19 11 10 21 21 H 0.97005 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.68385 * 359.95277 * 13 12 11 23 23 H 1.08007 * 119.49170 * 180.02562 * 15 14 13 24 24 H 1.08001 * 120.85603 * 180.25686 * 18 16 15 25 25 H 1.08000 * 125.46057 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0950 1.6965 -1.2124 5 1 1.2763 2.7465 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3089 -2.4253 -0.0048 10 7 1.8589 -3.6207 -0.0101 11 6 1.0246 -4.6337 -0.0141 12 6 1.4839 -6.0429 -0.0197 13 6 0.5656 -7.0871 -0.1280 14 7 0.9717 -8.3398 -0.1337 15 6 2.2480 -8.6592 -0.0380 16 6 3.2224 -7.6806 0.0729 17 9 4.5260 -8.0223 0.1696 18 6 2.8451 -6.3467 0.0775 19 6 -0.3044 -4.2920 -0.0126 20 16 -0.4434 -2.5878 0.0013 21 1 -0.4850 0.8401 0.0004 22 1 -0.4885 -6.8662 -0.2076 23 1 2.5380 -9.6995 -0.0471 24 1 3.5834 -5.5625 0.1585 25 1 -1.1302 -4.9880 -0.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236272745.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = -12.631388 kcal Electronic energy + Delta-G solvation = -14724.090662 eV Core-core repulsion = 11935.033380 eV Total energy + Delta-G solvation = -2789.057281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.02945 -41.15242 -39.23666 -36.07674 -33.69348 -32.46091 -30.42362 -28.31869 -25.72672 -24.65417 -23.40336 -20.56217 -19.75797 -18.49670 -18.13979 -17.73617 -17.17547 -16.86057 -16.80637 -15.59601 -15.02588 -14.90250 -14.68844 -14.28916 -14.24097 -14.04572 -13.56187 -13.22807 -12.99871 -12.43967 -12.04706 -11.58811 -11.56333 -10.95828 -10.77184 -10.19570 -9.89910 -9.86821 -8.94108 -8.92323 -6.74893 -0.36749 -0.04428 0.69689 1.40028 1.45875 1.51755 1.55906 1.93789 2.15855 2.16907 2.71098 2.95601 3.22172 3.31898 3.61720 3.76364 3.88383 4.05814 4.65171 4.75102 4.81658 4.93230 4.94479 5.25128 5.52582 5.59213 5.89196 6.36116 6.37557 6.71605 7.67824 7.98584 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.005711 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.612546 B = 4902.018737 C = 5637.446844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.022 3.978 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.399 4.399 8 H 0.102 0.898 9 C 0.169 3.831 10 N -0.621 5.621 11 C 0.117 3.883 12 C -0.034 4.034 13 C 0.100 3.900 14 N -0.461 5.461 15 C 0.071 3.929 16 C 0.048 3.952 17 F -0.130 7.130 18 C -0.101 4.101 19 C -0.449 4.449 20 S 0.121 5.879 21 H 0.314 0.686 22 H 0.177 0.823 23 H 0.203 0.797 24 H 0.138 0.862 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -4.566 0.020 4.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.198 4.198 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.180 1.180 6 H -0.181 1.181 7 C -0.441 4.441 8 H 0.120 0.880 9 C -0.084 4.084 10 N -0.343 5.343 11 C -0.022 4.022 12 C -0.038 4.038 13 C -0.058 4.058 14 N -0.168 5.168 15 C -0.087 4.087 16 C 0.026 3.974 17 F -0.109 7.109 18 C -0.129 4.129 19 C -0.594 4.594 20 S 0.382 5.618 21 H 0.127 0.873 22 H 0.194 0.806 23 H 0.220 0.780 24 H 0.155 0.845 25 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.148 -4.408 -0.038 4.410 hybrid contribution 1.358 0.377 0.094 1.413 sum 1.507 -4.031 0.056 4.304 Atomic orbital electron populations 1.68747 1.08983 1.32942 1.31831 1.27155 0.95926 1.05479 0.91270 0.84673 0.78334 0.73055 0.80432 1.18064 1.18030 1.18053 1.19335 0.96190 0.88292 1.40324 0.87976 1.24252 0.92734 0.94594 0.96792 1.67254 1.35693 0.97647 1.33738 1.18871 0.89074 0.91990 1.02302 1.19389 0.93108 0.92321 0.99030 1.23063 1.00752 0.86337 0.95681 1.67789 1.17020 1.20173 1.11852 1.23384 0.86882 1.00893 0.97585 1.18708 0.79769 0.93571 1.05318 1.91505 1.33015 1.92651 1.93696 1.21798 0.96969 0.95766 0.98370 1.26703 0.99571 1.04518 1.28593 1.84058 1.10312 0.94974 1.72483 0.87265 0.80621 0.77994 0.84457 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.17 10.64 21.87 0.23 -35.94 15 2 C 0.02 0.99 5.50 85.33 0.47 1.46 15 3 Si 1.02 33.18 29.56 68.60 2.03 35.21 15 4 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 5 H -0.26 -7.65 7.11 99.48 0.71 -6.94 15 6 H -0.26 -8.22 7.11 99.48 0.71 -7.52 15 7 C -0.40 -20.20 9.44 23.14 0.22 -19.98 15 8 H 0.10 5.02 7.85 -2.91 -0.02 5.00 15 9 C 0.17 9.08 7.11 85.13 0.61 9.68 15 10 N -0.62 -33.20 10.10 -183.96 -1.86 -35.05 15 11 C 0.12 5.62 6.65 41.65 0.28 5.89 15 12 C -0.03 -1.36 5.89 -19.94 -0.12 -1.48 15 13 C 0.10 3.41 10.65 85.01 0.91 4.31 15 14 N -0.46 -14.19 10.34 -194.65 -2.01 -16.20 15 15 C 0.07 1.93 11.16 84.75 0.95 2.88 15 16 C 0.05 1.48 7.34 22.43 0.16 1.65 15 17 F -0.13 -3.81 17.28 44.97 0.78 -3.03 15 18 C -0.10 -3.83 9.74 22.74 0.22 -3.61 15 19 C -0.45 -20.67 10.42 67.58 0.70 -19.96 15 20 S 0.12 5.93 20.12 -56.49 -1.14 4.79 15 21 H 0.31 12.48 8.29 -92.70 -0.77 11.71 15 22 H 0.18 5.37 6.65 -2.91 -0.02 5.35 15 23 H 0.20 3.73 8.06 -2.91 -0.02 3.71 15 24 H 0.14 5.57 7.77 -2.91 -0.02 5.54 15 25 H 0.16 6.35 6.90 -2.91 -0.02 6.33 15 Total: -1.00 -57.40 248.79 3.67 -53.73 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.24 Total: 15.65 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 4.39 Total: -19.16 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.64 Total: -87.19 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 2.03 Total: 35.21 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.14 Total: 4.79 kcal Total: -57.40 3.67 -53.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236272745.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.100 kcal (2) G-P(sol) polarization free energy of solvation -57.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds