Wall clock time and date at job start Mon Mar 30 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39904 * 120.01510 * 213.49704 * 3 2 1 5 5 C 1.38435 * 120.34747 * 179.97438 * 4 3 2 6 6 Br 1.89106 * 119.81002 * 180.02562 * 5 4 3 7 7 C 1.37832 * 120.38205 * 359.97438 * 5 4 3 8 8 C 1.40754 * 120.02395 * 0.02562 * 7 5 4 9 9 C 1.41423 * 120.17154 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00788 * 334.87108 * 9 8 7 11 11 C 1.39925 * 119.99975 * 154.87342 * 9 8 7 12 12 N 1.30834 * 119.99916 * 342.67513 * 11 9 8 13 13 Si 1.86797 * 120.00388 * 162.67592 * 11 9 8 14 14 H 1.48504 * 109.47279 * 89.99833 * 13 11 9 15 15 H 1.48502 * 109.47058 * 209.99763 * 13 11 9 16 16 H 1.48504 * 109.47056 * 329.99806 * 13 11 9 17 17 C 1.38937 * 120.01762 * 33.47767 * 3 2 1 18 18 H 4.52113 * 14.06427 * 359.97438 * 4 2 1 19 19 H 1.08002 * 119.82920 * 0.02562 * 4 3 2 20 20 H 1.08006 * 119.98838 * 179.74313 * 7 5 4 21 21 H 0.97005 * 120.00575 * 180.02562 * 12 11 9 22 22 H 1.07999 * 120.18910 * 0.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3054 1.0112 0.6686 5 6 4.6897 1.0182 0.6735 6 35 5.6197 2.3911 1.5826 7 6 5.3942 0.0298 0.0204 8 6 4.7066 -0.9945 -0.6573 9 6 5.4263 -2.0106 -1.3280 10 1 6.4304 -1.8206 -1.6774 11 6 4.8373 -3.2622 -1.5390 12 7 3.7867 -3.6163 -0.8444 13 14 5.5512 -4.4276 -2.8124 14 1 6.5741 -5.2935 -2.1727 15 1 4.4666 -5.2736 -3.3723 16 1 6.1803 -3.6423 -3.9046 17 6 3.3015 -1.0025 -0.6636 18 1 -1.0499 -0.0005 -0.0009 19 1 2.7625 1.7895 1.1843 20 1 6.4741 0.0437 0.0248 21 1 3.3786 -4.4841 -0.9904 22 1 2.7653 -1.7843 -1.1809 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238054523.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:46 Heat of formation + Delta-G solvation = 60.434158 kcal Electronic energy + Delta-G solvation = -10259.060364 eV Core-core repulsion = 8212.034510 eV Total energy + Delta-G solvation = -2047.025854 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 249.969 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.87838 -34.10567 -32.96379 -30.86341 -29.59703 -27.97780 -25.54222 -22.08368 -20.95668 -18.14345 -16.82972 -15.49238 -14.92834 -14.14343 -13.99151 -12.90174 -12.55558 -12.36372 -11.63105 -11.26162 -11.06793 -10.82447 -10.77232 -10.35392 -10.00868 -9.73173 -9.56748 -9.48634 -9.16191 -7.65085 -7.43684 -6.94882 -4.58422 2.09879 2.50732 2.53943 2.96397 2.99404 3.05546 3.48538 3.79646 3.84613 4.54826 5.04902 5.41604 6.17963 6.29624 6.62573 6.70191 6.82569 7.00332 7.10684 7.39751 7.62237 7.70736 7.88714 8.20355 8.34471 8.60822 8.64303 9.99257 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.008307 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.944834 B = 3369.964126 C = 4428.077516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.098 4.098 3 C 0.008 3.992 4 C -0.191 4.191 5 C -0.045 4.045 6 Br -0.105 7.105 7 C -0.189 4.189 8 C 0.110 3.890 9 C -0.454 4.454 10 H 0.085 0.915 11 C 0.074 3.926 12 N -0.788 5.788 13 Si 0.913 3.087 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.259 1.259 17 C -0.117 4.117 18 H 0.215 0.785 19 H 0.104 0.896 20 H 0.108 0.892 21 H 0.285 0.715 22 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 5.029 1.354 5.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.099 4.099 3 C 0.007 3.993 4 C -0.212 4.212 5 C -0.124 4.124 6 Br -0.020 7.020 7 C -0.210 4.210 8 C 0.106 3.894 9 C -0.483 4.483 10 H 0.103 0.897 11 C -0.145 4.145 12 N -0.412 5.412 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.182 1.182 17 C -0.136 4.136 18 H 0.232 0.768 19 H 0.122 0.878 20 H 0.126 0.874 21 H 0.096 0.904 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.545 5.332 1.736 5.634 hybrid contribution -0.183 -0.924 -0.614 1.124 sum 0.362 4.409 1.122 4.563 Atomic orbital electron populations 1.24525 0.95502 1.02924 1.03139 1.20529 0.92374 0.98372 0.98577 1.15765 0.85338 0.96901 1.01325 1.20219 0.91406 1.01219 1.08398 1.21088 0.93686 0.94932 1.02654 1.96444 1.77245 1.50766 1.77542 1.21050 0.98394 0.97919 1.03661 1.17455 0.91401 0.91165 0.89342 1.19579 1.01589 0.95348 1.31766 0.89719 1.25970 0.94258 0.99078 0.95158 1.69790 1.18145 1.21017 1.32278 0.86229 0.79510 0.79612 0.81014 1.19265 1.19920 1.18232 1.21597 0.94309 0.97172 1.00515 0.76785 0.87818 0.87387 0.90376 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.38 19.25 29.55 0.57 -3.81 14 2 C -0.10 -2.13 13.23 -38.84 -0.51 -2.64 14 3 C 0.01 0.19 5.72 -107.09 -0.61 -0.42 14 4 C -0.19 -4.32 9.49 -38.89 -0.37 -4.69 14 5 C -0.05 -1.01 6.21 -39.66 -0.25 -1.25 14 6 Br -0.10 -1.93 33.68 -68.01 -2.29 -4.22 14 7 C -0.19 -4.46 9.51 -38.78 -0.37 -4.83 14 8 C 0.11 2.80 5.57 -106.88 -0.59 2.21 14 9 C -0.45 -11.37 9.05 -37.74 -0.34 -11.71 14 10 H 0.08 2.02 7.90 -52.49 -0.41 1.60 14 11 C 0.07 1.77 5.14 -17.34 -0.09 1.68 14 12 N -0.79 -19.50 10.97 55.55 0.61 -18.89 14 13 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 14 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 17 C -0.12 -2.95 8.38 -38.47 -0.32 -3.27 14 18 H 0.22 2.77 7.80 -54.09 -0.42 2.35 14 19 H 0.10 2.17 8.06 -52.49 -0.42 1.74 14 20 H 0.11 2.41 8.06 -52.48 -0.42 1.99 14 21 H 0.29 6.41 8.30 -40.82 -0.34 6.07 14 22 H 0.13 3.37 6.18 -52.49 -0.32 3.04 14 LS Contribution 233.40 15.07 3.52 3.52 Total: -1.00 -25.77 233.40 -7.22 -32.99 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -1.14 Total: 2.65 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.89 Total: -28.74 kcal Atomic # 7 Polarization: -19.50 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 35 Polarization: -1.93 SS G_CDS: -2.29 Total: -4.22 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -25.77 -7.22 -32.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238054523.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.426 kcal (2) G-P(sol) polarization free energy of solvation -25.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds