Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39904 * 120.01510 * 213.49704 * 3 2 1 5 5 C 1.38435 * 120.34747 * 179.97438 * 4 3 2 6 6 Br 1.89106 * 119.81002 * 180.02562 * 5 4 3 7 7 C 1.37832 * 120.38205 * 359.97438 * 5 4 3 8 8 C 1.40754 * 120.02395 * 0.02562 * 7 5 4 9 9 C 1.41423 * 120.17154 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00788 * 334.87108 * 9 8 7 11 11 C 1.39925 * 119.99975 * 154.87342 * 9 8 7 12 12 N 1.30834 * 119.99916 * 342.67513 * 11 9 8 13 13 Si 1.86797 * 120.00388 * 162.67592 * 11 9 8 14 14 H 1.48504 * 109.47279 * 89.99833 * 13 11 9 15 15 H 1.48502 * 109.47058 * 209.99763 * 13 11 9 16 16 H 1.48504 * 109.47056 * 329.99806 * 13 11 9 17 17 C 1.38937 * 120.01762 * 33.47767 * 3 2 1 18 18 H 4.52113 * 14.06427 * 359.97438 * 4 2 1 19 19 H 1.08002 * 119.82920 * 0.02562 * 4 3 2 20 20 H 1.08006 * 119.98838 * 179.74313 * 7 5 4 21 21 H 0.97005 * 120.00575 * 180.02562 * 12 11 9 22 22 H 1.07999 * 120.18910 * 0.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3054 1.0112 0.6686 5 6 4.6897 1.0182 0.6735 6 35 5.6197 2.3911 1.5826 7 6 5.3942 0.0298 0.0204 8 6 4.7066 -0.9945 -0.6573 9 6 5.4263 -2.0106 -1.3280 10 1 6.4304 -1.8206 -1.6774 11 6 4.8373 -3.2622 -1.5390 12 7 3.7867 -3.6163 -0.8444 13 14 5.5512 -4.4276 -2.8124 14 1 6.5741 -5.2935 -2.1727 15 1 4.4666 -5.2736 -3.3723 16 1 6.1803 -3.6423 -3.9046 17 6 3.3015 -1.0025 -0.6636 18 1 -1.0499 -0.0005 -0.0009 19 1 2.7625 1.7895 1.1843 20 1 6.4741 0.0437 0.0248 21 1 3.3786 -4.4841 -0.9904 22 1 2.7653 -1.7843 -1.1809 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238054523.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = 48.273909 kcal Electronic energy + Delta-G solvation = -10259.587672 eV Core-core repulsion = 8212.034510 eV Total energy + Delta-G solvation = -2047.553162 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 249.969 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.65922 -35.88538 -34.60090 -32.60414 -31.31729 -29.70868 -27.38079 -23.81346 -22.77761 -19.83271 -18.54702 -17.22921 -16.66173 -15.82245 -15.73614 -14.57696 -14.27621 -14.13268 -13.32934 -12.98881 -12.75508 -12.43301 -12.39145 -11.95920 -11.81542 -11.41458 -11.21601 -11.08229 -10.87524 -9.46829 -9.19147 -8.72612 -6.47477 0.34852 0.71093 0.82327 1.39032 1.43372 1.54716 1.93913 2.14528 2.20600 2.80087 3.57115 3.59457 4.41431 4.59088 4.82593 4.98173 5.05804 5.22157 5.36058 5.58707 5.81831 5.87854 6.04414 6.45218 6.68925 6.78345 6.79061 8.23969 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.008307 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.944834 B = 3369.964126 C = 4428.077516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.182 4.182 3 C 0.007 3.993 4 C -0.197 4.197 5 C -0.051 4.051 6 Br -0.064 7.064 7 C -0.202 4.202 8 C 0.086 3.914 9 C -0.487 4.487 10 H 0.087 0.913 11 C 0.036 3.964 12 N -0.820 5.820 13 Si 0.986 3.014 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.256 1.256 17 C -0.147 4.147 18 H 0.268 0.732 19 H 0.120 0.880 20 H 0.114 0.886 21 H 0.292 0.708 22 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 5.311 1.324 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.182 4.182 3 C 0.006 3.994 4 C -0.218 4.218 5 C -0.130 4.130 6 Br 0.021 6.979 7 C -0.224 4.224 8 C 0.083 3.917 9 C -0.515 4.515 10 H 0.105 0.895 11 C -0.180 4.180 12 N -0.445 5.445 13 Si 0.806 3.194 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.180 1.180 17 C -0.166 4.166 18 H 0.284 0.716 19 H 0.138 0.862 20 H 0.132 0.868 21 H 0.103 0.897 22 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.234 5.637 1.723 5.899 hybrid contribution -0.059 -0.882 -0.505 1.018 sum -0.293 4.755 1.217 4.917 Atomic orbital electron populations 1.25673 0.96204 0.98688 0.98586 1.20736 0.92876 1.02178 1.02423 1.16019 0.87135 0.96212 1.00057 1.20486 0.91733 1.01354 1.08222 1.21319 0.94061 0.95540 1.02063 1.96445 1.76404 1.48528 1.76497 1.21169 0.98748 0.98278 1.04185 1.17794 0.91922 0.92066 0.89931 1.19868 1.02129 0.96347 1.33188 0.89477 1.26836 0.94388 1.00272 0.96543 1.69852 1.19321 1.21834 1.33498 0.85140 0.78881 0.77267 0.78131 1.18468 1.19084 1.17975 1.21499 0.94467 0.98097 1.02558 0.71620 0.86175 0.86779 0.89695 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 19.25 74.32 1.43 -4.30 14 2 C -0.18 -7.74 13.23 30.02 0.40 -7.35 14 3 C 0.01 0.34 5.72 -21.46 -0.12 0.22 14 4 C -0.20 -8.90 9.49 22.72 0.22 -8.69 14 5 C -0.05 -2.27 6.21 22.22 0.14 -2.13 14 6 Br -0.06 -2.26 33.68 -20.37 -0.69 -2.95 14 7 C -0.20 -9.79 9.51 22.79 0.22 -9.57 14 8 C 0.09 4.57 5.57 -21.33 -0.12 4.45 14 9 C -0.49 -25.20 9.05 23.46 0.21 -24.99 14 10 H 0.09 4.28 7.90 -2.91 -0.02 4.25 14 11 C 0.04 1.73 5.14 85.25 0.44 2.17 14 12 N -0.82 -41.71 10.97 21.82 0.24 -41.47 14 13 Si 0.99 36.52 29.59 68.60 2.03 38.55 14 14 H -0.26 -9.26 7.11 99.48 0.71 -8.56 14 15 H -0.27 -9.43 7.11 99.48 0.71 -8.72 14 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 14 17 C -0.15 -7.74 8.38 22.99 0.19 -7.55 14 18 H 0.27 5.33 7.80 -4.42 -0.03 5.30 14 19 H 0.12 4.91 8.06 -2.91 -0.02 4.88 14 20 H 0.11 5.20 8.06 -2.91 -0.02 5.18 14 21 H 0.29 13.38 8.30 -92.70 -0.77 12.61 14 22 H 0.11 6.12 6.18 -2.91 -0.02 6.11 14 Total: -1.00 -56.96 233.40 5.81 -51.14 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.23 Total: 12.47 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 3.00 Total: -57.75 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Atomic # 35 Polarization: -2.26 SS G_CDS: -0.69 Total: -2.95 kcal Total: -56.96 5.81 -51.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238054523.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.418 kcal (2) G-P(sol) polarization free energy of solvation -56.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds