Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86800 * 119.99697 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99602 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99833 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99923 * 3 2 1 7 7 C 1.40651 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99811 * 179.72468 * 7 2 1 9 9 C 1.43205 * 119.99782 * 0.02562 * 7 2 1 10 10 C 3.52625 * 80.20856 * 179.97438 * 2 1 3 11 11 C 4.89521 * 74.40866 * 179.97438 * 2 1 3 12 12 C 1.40397 * 120.20388 * 86.80596 * 11 10 9 13 13 C 1.37683 * 119.78649 * 179.76256 * 12 11 10 14 14 C 1.38655 * 120.20788 * 0.51810 * 13 12 11 15 15 Br 1.89101 * 119.79209 * 179.71492 * 14 13 12 16 16 C 1.38655 * 120.41947 * 359.73528 * 14 13 12 17 17 C 1.37682 * 120.20700 * 0.02562 * 16 14 13 18 18 H 0.96995 * 120.00171 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.10432 * 0.02562 * 12 11 10 20 20 H 1.07997 * 119.89357 * 180.25528 * 13 12 11 21 21 H 1.08005 * 119.90106 * 179.97438 * 16 14 13 22 22 H 1.08005 * 120.10595 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 2.4869 2.0465 -1.4001 5 1 1.4368 2.6528 0.7000 6 1 3.5369 1.4402 0.7001 7 6 2.0088 -1.2180 0.0005 8 1 3.0887 -1.2180 -0.0039 9 6 1.2927 -2.4582 0.0005 10 6 0.7058 -3.4749 0.0016 11 6 -0.0103 -4.7151 0.0021 12 6 -0.4222 -5.2934 -1.2091 13 6 -1.1058 -6.4884 -1.1988 14 6 -1.3970 -7.1153 0.0032 15 35 -2.3436 -8.7523 0.0040 16 6 -0.9990 -6.5491 1.2047 17 6 -0.3101 -5.3571 1.2142 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1998 -4.8045 -2.1461 20 1 -1.4199 -6.9369 -2.1297 21 1 -1.2306 -7.0444 2.1361 22 1 -0.0012 -4.9173 2.1510 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238059052.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = 36.587428 kcal Electronic energy + Delta-G solvation = -9718.815475 eV Core-core repulsion = 7670.755549 eV Total energy + Delta-G solvation = -2048.059926 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 249.969 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96834 -35.76631 -34.22792 -32.32238 -32.06518 -30.09869 -27.55963 -23.58364 -23.58098 -20.57640 -18.50040 -17.14936 -16.55217 -16.18199 -15.45241 -14.64384 -14.47520 -14.36987 -13.76415 -13.20506 -13.09583 -12.43840 -12.43003 -12.14561 -11.98138 -11.68452 -11.23924 -10.82030 -10.60954 -10.03599 -9.02924 -8.70288 -6.73166 -0.09082 0.37271 0.62595 1.35380 1.38571 1.56373 2.15407 2.16552 2.31970 3.29906 3.34534 3.90850 3.92595 3.97956 4.38378 4.51781 4.70914 5.02765 5.09556 5.19101 5.20739 5.69485 5.75867 6.04266 6.39236 6.74437 7.55745 8.39553 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.105920 B = 0.003943 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.285851 B = 7099.654181 C = 7141.543960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.249 1.249 7 C -0.491 4.491 8 H 0.103 0.897 9 C 0.029 3.971 10 C -0.422 4.422 11 C 0.080 3.920 12 C -0.125 4.125 13 C -0.078 4.078 14 C -0.113 4.113 15 Br -0.039 7.039 16 C -0.078 4.078 17 C -0.125 4.125 18 H 0.290 0.710 19 H 0.126 0.874 20 H 0.157 0.843 21 H 0.157 0.843 22 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -13.686 0.016 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.180 4.180 3 Si 0.830 3.170 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.522 4.522 8 H 0.121 0.879 9 C 0.028 3.972 10 C -0.425 4.425 11 C 0.080 3.920 12 C -0.144 4.144 13 C -0.097 4.097 14 C -0.193 4.193 15 Br 0.046 6.954 16 C -0.097 4.097 17 C -0.144 4.144 18 H 0.100 0.900 19 H 0.144 0.856 20 H 0.174 0.826 21 H 0.175 0.825 22 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.414 -14.192 0.020 15.190 hybrid contribution 0.447 1.201 -0.018 1.281 sum -4.967 -12.991 0.002 13.908 Atomic orbital electron populations 1.69708 1.09740 1.31147 1.39067 1.27143 0.95739 1.04718 0.90393 0.84789 0.78609 0.73776 0.79865 1.18115 1.19026 1.17247 1.18791 0.93951 0.85984 1.53452 0.87916 1.20688 0.92888 0.91288 0.92314 1.19142 1.03386 0.96462 1.23506 1.16552 0.92905 0.88374 0.94167 1.21549 0.99510 0.95990 0.97377 1.21148 0.96861 0.93892 0.97843 1.21964 1.05442 0.95745 0.96104 1.96631 1.73780 1.25679 1.99316 1.21153 0.96376 0.94371 0.97834 1.21553 0.99844 0.95666 0.97334 0.89998 0.85600 0.82566 0.82529 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.73 13.26 21.96 0.29 -49.44 14 2 C 0.03 1.66 5.51 85.47 0.47 2.13 14 3 Si 1.01 39.02 29.57 68.60 2.03 41.05 14 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 14 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 14 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 14 7 C -0.49 -28.31 9.61 24.11 0.23 -28.08 14 8 H 0.10 5.47 7.86 -2.91 -0.02 5.45 14 9 C 0.03 1.80 13.02 30.02 0.39 2.19 14 10 C -0.42 -23.83 13.26 30.02 0.40 -23.43 14 11 C 0.08 3.65 5.78 -20.98 -0.12 3.53 14 12 C -0.13 -4.79 9.79 22.66 0.22 -4.57 14 13 C -0.08 -2.36 9.76 22.24 0.22 -2.15 14 14 C -0.11 -3.27 6.24 22.47 0.14 -3.13 14 15 Br -0.04 -0.89 33.69 -20.37 -0.69 -1.58 14 16 C -0.08 -2.35 9.76 22.24 0.22 -2.14 14 17 C -0.13 -4.76 9.79 22.66 0.22 -4.54 14 18 H 0.29 14.79 8.29 -92.71 -0.77 14.02 14 19 H 0.13 4.74 8.06 -2.91 -0.02 4.72 14 20 H 0.16 3.73 8.06 -2.91 -0.02 3.71 14 21 H 0.16 3.72 8.06 -2.91 -0.02 3.69 14 22 H 0.13 4.73 8.06 -2.91 -0.02 4.71 14 Total: -1.00 -65.13 238.73 5.26 -59.87 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.24 Total: 10.28 kcal Atomic # 6 Polarization: -62.57 SS G_CDS: 2.39 Total: -60.19 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.29 Total: -49.44 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.58 kcal Total: -65.13 5.26 -59.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238059052.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.458 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds