Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30529 * 1 3 3 Si 1.86800 * 120.00279 * 2 1 4 4 H 1.48504 * 109.47117 * 270.00366 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99799 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99835 * 3 2 1 7 7 C 1.40664 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.43205 * 119.99942 * 0.02562 * 7 2 1 10 10 C 3.52638 * 80.20953 * 179.97438 * 2 1 3 11 11 C 4.89534 * 74.40951 * 179.97438 * 2 1 3 12 12 C 1.40403 * 120.20898 * 272.63677 * 11 10 9 13 13 C 1.37710 * 119.79568 * 179.67161 * 12 11 10 14 14 C 1.38547 * 120.22438 * 0.63310 * 13 12 11 15 15 C 1.38607 * 120.43414 * 359.66734 * 14 13 12 16 16 Br 1.89106 * 119.90139 * 180.02562 * 15 14 13 17 17 C 1.37834 * 120.19847 * 359.97438 * 15 14 13 18 18 H 0.97005 * 119.99986 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.10200 * 359.97438 * 12 11 10 20 20 H 1.07996 * 119.88637 * 180.29855 * 13 12 11 21 21 H 1.08003 * 119.78304 * 179.68822 * 14 13 12 22 22 H 1.07999 * 120.11708 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4868 2.0464 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4402 0.7000 7 6 2.0086 -1.2182 0.0005 8 1 3.0886 -1.2182 0.0001 9 6 1.2926 -2.4584 0.0005 10 6 0.7056 -3.4750 0.0016 11 6 -0.0104 -4.7152 0.0021 12 6 -0.4117 -5.2987 1.2145 13 6 -1.1058 -6.4881 1.2048 14 6 -1.3970 -7.1158 0.0045 15 6 -0.9999 -6.5514 -1.1975 16 35 -1.4061 -7.4208 -2.8270 17 6 -0.3108 -5.3578 -1.2088 18 1 -0.4850 0.8401 0.0004 19 1 -0.1811 -4.8138 2.1515 20 1 -1.4194 -6.9357 2.1362 21 1 -1.9374 -8.0510 0.0055 22 1 -0.0023 -4.9190 -2.1462 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238065088.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = 36.486425 kcal Electronic energy + Delta-G solvation = -9755.086361 eV Core-core repulsion = 7707.022055 eV Total energy + Delta-G solvation = -2048.064306 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 249.969 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96086 -35.76047 -34.09849 -33.05423 -31.30148 -30.11852 -27.74966 -23.98045 -23.13973 -20.53022 -18.40333 -17.22924 -16.68034 -16.17759 -15.38279 -14.62974 -14.44306 -14.39017 -13.75968 -13.20470 -13.09545 -12.49748 -12.31750 -12.08184 -11.98488 -11.67961 -11.28892 -11.06467 -10.61140 -9.78077 -9.10524 -8.70863 -6.73175 0.03607 0.24571 0.57917 1.35305 1.38004 1.56043 2.16306 2.17162 2.35055 3.29677 3.35496 3.87246 3.95636 4.16297 4.28959 4.47656 4.78941 4.93568 5.14690 5.19125 5.33756 5.65350 5.79232 6.05379 6.39541 6.74154 7.56386 8.39483 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.043277 B = 0.004838 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.846249 B = 5786.291000 C = 6232.792274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.029 3.971 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.026 3.974 10 C -0.421 4.421 11 C 0.067 3.933 12 C -0.115 4.115 13 C -0.095 4.095 14 C -0.101 4.101 15 C -0.089 4.089 16 Br -0.044 7.044 17 C -0.107 4.107 18 H 0.290 0.710 19 H 0.125 0.875 20 H 0.173 0.827 21 H 0.165 0.835 22 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -12.890 -1.831 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.182 4.182 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.521 4.521 8 H 0.120 0.880 9 C 0.024 3.976 10 C -0.423 4.423 11 C 0.066 3.934 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.168 4.168 16 Br 0.041 6.959 17 C -0.127 4.127 18 H 0.100 0.900 19 H 0.143 0.857 20 H 0.190 0.810 21 H 0.182 0.818 22 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.634 -13.105 -2.450 14.115 hybrid contribution 0.391 1.118 0.159 1.195 sum -4.243 -11.987 -2.290 12.921 Atomic orbital electron populations 1.69708 1.09754 1.31129 1.39041 1.27175 0.95777 1.04798 0.90420 0.84770 0.78606 0.73706 0.79823 1.18214 1.18943 1.17203 1.18781 0.93905 0.85970 1.53422 0.87973 1.20681 0.93245 0.91415 0.92213 1.19116 1.03258 0.96409 1.23564 1.16319 0.94673 0.88823 0.93619 1.21781 0.98215 0.96476 0.96846 1.21403 0.96893 0.93730 0.99354 1.21525 0.99724 1.00974 0.89858 1.21729 1.04908 0.97079 0.93117 1.96624 1.93538 1.77602 1.28146 1.21349 0.99133 0.94586 0.97670 0.90008 0.85691 0.81010 0.81791 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.22 13.25 21.96 0.29 -49.93 14 2 C 0.03 1.58 5.51 85.48 0.47 2.05 14 3 Si 1.01 39.48 29.57 68.60 2.03 41.51 14 4 H -0.26 -9.54 7.11 99.48 0.71 -8.84 14 5 H -0.27 -9.74 7.11 99.48 0.71 -9.03 14 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 14 7 C -0.49 -28.60 9.61 24.11 0.23 -28.37 14 8 H 0.10 5.51 7.86 -2.91 -0.02 5.49 14 9 C 0.03 1.59 13.02 30.02 0.39 1.98 14 10 C -0.42 -24.17 13.26 30.02 0.40 -23.77 14 11 C 0.07 3.08 5.78 -20.99 -0.12 2.96 14 12 C -0.11 -4.27 9.79 22.67 0.22 -4.05 14 13 C -0.10 -2.59 10.02 22.22 0.22 -2.36 14 14 C -0.10 -2.68 9.79 22.43 0.22 -2.46 14 15 C -0.09 -2.86 6.22 22.26 0.14 -2.72 14 16 Br -0.04 -1.19 33.69 -20.37 -0.69 -1.87 14 17 C -0.11 -4.36 9.52 22.68 0.22 -4.14 14 18 H 0.29 14.93 8.29 -92.70 -0.77 14.16 14 19 H 0.13 4.55 8.06 -2.91 -0.02 4.53 14 20 H 0.17 3.10 8.06 -2.91 -0.02 3.08 14 21 H 0.16 3.09 8.06 -2.91 -0.02 3.07 14 22 H 0.11 4.80 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -67.62 238.73 5.26 -62.36 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.24 Total: 8.82 kcal Atomic # 6 Polarization: -63.28 SS G_CDS: 2.39 Total: -60.89 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.29 Total: -49.93 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -0.69 Total: -1.87 kcal Total: -67.62 5.26 -62.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238065088.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.851 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds