Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30536 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48501 * 109.47093 * 270.00056 * 3 2 1 5 5 H 1.48494 * 109.47212 * 29.99651 * 3 2 1 6 6 H 1.48503 * 109.47403 * 149.99884 * 3 2 1 7 7 C 1.40658 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.43205 * 119.99736 * 359.97438 * 7 2 1 10 10 C 3.52630 * 80.20754 * 179.97438 * 2 1 3 11 11 C 4.89526 * 74.40783 * 179.97438 * 2 1 3 12 12 C 1.40404 * 120.22090 * 312.98472 * 11 10 9 13 13 C 1.37689 * 119.78268 * 180.02562 * 12 11 10 14 14 C 1.38590 * 120.24586 * 359.97438 * 13 12 11 15 15 C 1.38475 * 120.45964 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.20643 * 359.97438 * 15 14 13 17 17 Br 1.89104 * 120.12704 * 179.97438 * 16 15 14 18 18 H 0.97005 * 119.99680 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.11109 * 0.02562 * 12 11 10 20 20 H 1.08002 * 119.87079 * 179.97438 * 13 12 11 21 21 H 1.08001 * 119.77438 * 180.02562 * 14 13 12 22 22 H 1.08000 * 119.89555 * 179.72664 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4369 2.6527 0.6999 6 1 3.5370 1.4402 0.7001 7 6 2.0087 -1.2181 0.0005 8 1 3.0887 -1.2181 0.0010 9 6 1.2927 -2.4583 0.0017 10 6 0.7056 -3.4749 0.0016 11 6 -0.0104 -4.7151 0.0021 12 6 -1.0800 -4.9132 0.8899 13 6 -1.7618 -6.1094 0.8831 14 6 -1.3964 -7.1163 0.0037 15 6 -0.3432 -6.9317 -0.8762 16 6 0.3525 -5.7415 -0.8855 17 35 1.7909 -5.4922 -2.0875 18 1 -0.4850 0.8401 -0.0004 19 1 -1.3669 -4.1300 1.5759 20 1 -2.5845 -6.2635 1.5657 21 1 -1.9368 -8.0514 0.0045 22 1 -0.0634 -7.7241 -1.5546 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238069756.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = 36.682294 kcal Electronic energy + Delta-G solvation = -9912.765759 eV Core-core repulsion = 7864.709946 eV Total energy + Delta-G solvation = -2048.055812 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 249.969 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85577 -35.75181 -33.95006 -33.00410 -31.21472 -30.03679 -27.67185 -23.85757 -23.03460 -20.55269 -18.42221 -17.14991 -16.52235 -16.11789 -15.39052 -14.57980 -14.36350 -14.35130 -13.73719 -13.17453 -13.08843 -12.40505 -12.20792 -11.99341 -11.84833 -11.74690 -11.07265 -11.02698 -10.41339 -9.71517 -9.13298 -8.73091 -6.66856 0.09737 0.34351 0.85091 1.36523 1.37444 1.54716 2.16719 2.21820 2.49843 3.03773 3.62562 3.95486 4.01004 4.21093 4.45624 4.58917 4.80419 5.04464 5.15400 5.32208 5.49554 5.59747 5.90992 6.08849 6.40281 6.73281 7.62573 8.37780 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.007526 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.272163 B = 3719.356401 C = 4563.130318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.030 3.970 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.250 1.250 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.036 3.964 10 C -0.411 4.411 11 C 0.088 3.912 12 C -0.144 4.144 13 C -0.088 4.088 14 C -0.130 4.130 15 C -0.084 4.084 16 C -0.123 4.123 17 Br -0.066 7.066 18 H 0.290 0.710 19 H 0.114 0.886 20 H 0.162 0.838 21 H 0.172 0.828 22 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -10.839 -1.652 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.181 4.181 3 Si 0.828 3.172 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.118 0.882 9 C 0.034 3.966 10 C -0.414 4.414 11 C 0.086 3.914 12 C -0.163 4.163 13 C -0.106 4.106 14 C -0.149 4.149 15 C -0.104 4.104 16 C -0.202 4.202 17 Br 0.020 6.980 18 H 0.101 0.899 19 H 0.132 0.868 20 H 0.180 0.820 21 H 0.190 0.810 22 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.168 -10.618 -2.104 10.888 hybrid contribution 0.022 0.913 0.240 0.944 sum -1.146 -9.706 -1.865 9.949 Atomic orbital electron populations 1.69702 1.09673 1.31155 1.38361 1.27149 0.95774 1.04719 0.90503 0.84816 0.78682 0.73900 0.79836 1.18240 1.18817 1.17291 1.18798 0.93885 0.86112 1.52117 0.88194 1.20471 0.93540 0.91512 0.91038 1.18847 1.03089 0.96090 1.23342 1.16368 0.93386 0.87732 0.93890 1.21509 0.96404 0.99292 0.99145 1.21489 0.98947 0.91506 0.98617 1.21598 0.97140 1.00687 0.95441 1.21297 0.95084 0.94454 0.99516 1.22277 0.99394 0.98513 1.00052 1.96529 1.44359 1.98066 1.59064 0.89943 0.86834 0.82012 0.81027 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.45 13.26 21.96 0.29 -49.15 14 2 C 0.03 1.63 5.51 85.48 0.47 2.10 14 3 Si 1.01 39.64 29.57 68.60 2.03 41.66 14 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 14 5 H -0.26 -9.72 7.11 99.48 0.71 -9.02 14 6 H -0.25 -9.27 7.11 99.48 0.71 -8.56 14 7 C -0.48 -28.00 9.61 24.11 0.23 -27.77 14 8 H 0.10 5.45 7.86 -2.91 -0.02 5.43 14 9 C 0.04 2.21 13.02 30.02 0.39 2.60 14 10 C -0.41 -23.58 12.15 30.02 0.36 -23.22 14 11 C 0.09 4.15 5.78 -20.96 -0.12 4.03 14 12 C -0.14 -5.71 9.79 22.67 0.22 -5.48 14 13 C -0.09 -2.46 10.02 22.22 0.22 -2.24 14 14 C -0.13 -3.21 10.04 22.41 0.23 -2.98 14 15 C -0.08 -2.50 9.77 22.24 0.22 -2.28 14 16 C -0.12 -4.92 6.27 22.72 0.14 -4.78 14 17 Br -0.07 -2.59 32.67 -20.37 -0.67 -3.25 14 18 H 0.29 14.83 8.29 -92.70 -0.77 14.07 14 19 H 0.11 4.63 8.06 -2.91 -0.02 4.60 14 20 H 0.16 3.20 8.06 -2.91 -0.02 3.18 14 21 H 0.17 2.59 8.06 -2.91 -0.02 2.57 14 22 H 0.15 3.60 8.06 -2.91 -0.02 3.58 14 Total: -1.00 -69.13 237.16 5.26 -63.87 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.24 Total: 6.89 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 2.37 Total: -60.02 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.29 Total: -49.15 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 35 Polarization: -2.59 SS G_CDS: -0.67 Total: -3.25 kcal Total: -69.13 5.26 -63.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238069756.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.554 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds