Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48510 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 299.99793 * 3 2 1 6 6 H 1.48502 * 109.47058 * 60.00267 * 3 2 1 7 7 C 1.37880 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47302 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.76197 * 103.00004 * 180.02562 * 11 10 9 13 13 N 1.30753 * 121.21093 * 359.97051 * 12 11 10 14 14 S 1.69942 * 105.67783 * 180.02562 * 13 12 11 15 15 C 1.72279 * 94.63106 * 0.02562 * 14 13 12 16 16 Cl 1.73594 * 127.41290 * 179.73507 * 15 14 13 17 17 N 1.31029 * 105.17052 * 0.02562 * 15 14 13 18 18 H 0.97003 * 119.99562 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46405 * 60.00107 * 9 7 2 20 20 H 1.09001 * 109.47293 * 300.00406 * 9 7 2 21 21 H 1.09007 * 109.46737 * 60.00149 * 10 9 7 22 22 H 1.09001 * 109.47298 * 300.00427 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 16 1.3380 -5.2331 -0.0026 12 6 2.6266 -6.4348 -0.0033 13 7 3.8848 -6.0791 -0.0037 14 16 4.7718 -7.5287 -0.0050 15 6 3.3797 -8.5436 -0.0056 16 17 3.3398 -10.2790 -0.0134 17 7 2.3576 -7.7237 -0.0054 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8904 20 1 0.6245 -2.5571 0.8896 21 1 2.8724 -3.6048 0.8878 22 1 2.8711 -3.6040 -0.8922 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238517469.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = 20.979074 kcal Electronic energy + Delta-G solvation = -11155.060463 eV Core-core repulsion = 8795.407873 eV Total energy + Delta-G solvation = -2359.652590 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 249.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36073 -38.43941 -35.83977 -33.73000 -32.88180 -27.58793 -27.38813 -23.79236 -22.49540 -20.46701 -18.70611 -18.31149 -17.36932 -17.03795 -16.52177 -15.61814 -15.48214 -14.23563 -13.92825 -13.80628 -13.78806 -13.45827 -12.97730 -12.51961 -12.30432 -12.28682 -11.79562 -11.67041 -11.61612 -11.23447 -11.15752 -10.94075 -10.60925 -8.91343 -8.24163 -6.36651 -1.13478 -0.74322 -0.36227 0.13051 0.73833 0.92753 1.42457 1.42503 1.46982 1.56423 2.41030 3.10368 3.31192 3.93302 4.15327 4.28605 4.76829 5.35076 5.43423 5.71996 5.80370 6.09198 6.76184 7.32842 8.87848 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.065509 B = 0.004220 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.320008 B = 6633.898361 C = 7040.767813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.042 3.958 10 C -0.073 4.073 11 S 0.014 5.986 12 C 0.256 3.744 13 N -0.509 5.509 14 S 0.358 5.642 15 C 0.112 3.888 16 Cl 0.095 6.905 17 N -0.504 5.504 18 H 0.267 0.733 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.084 0.916 22 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -18.862 -0.019 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.003 3.997 10 C -0.222 4.222 11 S 0.243 5.757 12 C -0.139 4.139 13 N -0.347 5.347 14 S 0.490 5.510 15 C -0.202 4.202 16 Cl 0.122 6.878 17 N -0.231 5.231 18 H 0.076 0.924 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.103 0.897 22 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.288 -18.395 -0.021 20.606 hybrid contribution 0.365 0.539 0.002 0.651 sum 9.652 -17.856 -0.019 20.298 Atomic orbital electron populations 1.70088 1.07775 1.28112 1.50819 1.25922 0.95750 1.03213 0.94279 0.85344 0.79026 0.78470 0.77885 1.18576 1.20251 1.20263 1.21478 0.93672 0.91036 1.51781 0.91641 1.18756 0.93608 0.90650 0.96730 1.23724 1.01409 0.91582 1.05453 1.85977 1.04214 0.95511 1.89996 1.25137 0.95260 0.93387 1.00098 1.77886 1.05701 1.20816 1.30298 1.84644 1.12233 0.91394 1.62700 1.29397 0.95164 0.96001 0.99604 1.98475 1.97972 0.95750 1.95563 1.67124 1.34198 1.00594 1.21169 0.92428 0.97273 0.97266 0.89737 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.69 14 2 C 0.01 0.41 5.46 84.66 0.46 0.87 14 3 Si 0.97 43.11 29.54 68.60 2.03 45.13 14 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 14 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 14 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 14 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 14 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 14 9 C 0.04 2.16 4.98 29.85 0.15 2.30 14 10 C -0.07 -3.05 5.23 71.98 0.38 -2.67 14 11 S 0.01 0.51 22.14 -56.49 -1.25 -0.74 14 12 C 0.26 8.66 7.79 181.23 1.41 10.07 14 13 N -0.51 -16.40 11.40 -67.30 -0.77 -17.17 14 14 S 0.36 7.90 23.81 -56.49 -1.34 6.56 14 15 C 0.11 2.60 8.49 130.36 1.11 3.71 14 16 Cl 0.09 1.53 29.33 -2.72 -0.08 1.45 14 17 N -0.50 -15.41 10.61 -200.68 -2.13 -17.54 14 18 H 0.27 14.76 8.31 -92.71 -0.77 13.99 14 19 H 0.01 0.49 8.14 -2.38 -0.02 0.47 14 20 H 0.01 0.49 8.14 -2.39 -0.02 0.47 14 21 H 0.08 3.49 8.14 -2.39 -0.02 3.47 14 22 H 0.08 3.49 8.14 -2.39 -0.02 3.47 14 Total: -1.00 -61.77 251.12 1.73 -60.04 By element: Atomic # 1 Polarization: -8.97 SS G_CDS: 1.25 Total: -7.72 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.74 Total: -15.33 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -2.61 Total: -89.40 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -2.60 Total: 5.82 kcal Atomic # 17 Polarization: 1.53 SS G_CDS: -0.08 Total: 1.45 kcal Total: -61.77 1.73 -60.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238517469.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.017 kcal (2) G-P(sol) polarization free energy of solvation -61.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds