Wall clock time and date at job start Mon Mar 30 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.50700 * 109.46814 * 119.99847 * 2 1 3 5 5 H 1.07998 * 120.00184 * 120.00360 * 4 2 1 6 6 C 1.37881 * 119.99930 * 299.99300 * 4 2 1 7 7 N 1.31513 * 120.00026 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00323 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47324 * 89.98950 * 8 6 4 10 10 H 1.48494 * 109.47324 * 209.99526 * 8 6 4 11 11 H 1.48502 * 109.46624 * 329.99488 * 8 6 4 12 12 N 1.46893 * 109.46881 * 239.99840 * 2 1 3 13 13 C 1.46857 * 110.99714 * 184.18212 * 12 2 1 14 14 C 1.53032 * 109.56543 * 174.12481 * 13 12 2 15 15 C 1.53145 * 109.26366 * 59.22683 * 14 13 12 16 16 C 1.52968 * 109.15993 * 302.52421 * 15 14 13 17 17 C 1.52868 * 109.76212 * 178.03772 * 16 15 14 18 18 C 1.50103 * 110.14993 * 168.94941 * 17 16 15 19 19 C 1.29435 * 124.04685 * 343.34213 * 18 17 16 20 20 C 1.50059 * 124.13445 * 359.92953 * 19 18 17 21 21 C 1.53042 * 110.20659 * 343.30667 * 20 19 18 22 22 C 1.46871 * 111.00452 * 60.00006 * 12 2 1 23 23 H 1.09002 * 109.46927 * 300.00568 * 1 2 3 24 24 H 1.08992 * 109.47084 * 60.00034 * 1 2 3 25 25 H 1.08996 * 109.46830 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00165 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.45718 * 294.15849 * 13 12 2 28 28 H 1.09001 * 109.45393 * 54.11920 * 13 12 2 29 29 H 1.09004 * 109.50665 * 179.16375 * 14 13 12 30 30 H 1.09001 * 109.50900 * 299.24549 * 14 13 12 31 31 H 1.08995 * 109.52850 * 182.62192 * 15 14 13 32 32 H 1.09000 * 109.52597 * 62.42808 * 15 14 13 33 33 H 1.09001 * 109.35860 * 48.74328 * 17 16 15 34 34 H 1.09005 * 109.24544 * 289.08775 * 17 16 15 35 35 H 1.08002 * 117.97282 * 163.05642 * 18 17 16 36 36 H 1.08002 * 117.93611 * 180.20294 * 19 18 17 37 37 H 1.09004 * 109.49956 * 222.97987 * 20 19 18 38 38 H 1.09008 * 109.05584 * 103.35700 * 20 19 18 39 39 H 1.09003 * 109.63688 * 289.39640 * 21 20 19 40 40 H 1.08999 * 109.81055 * 168.87419 * 21 20 19 41 41 H 1.09004 * 109.46191 * 65.62854 * 22 12 2 42 42 H 1.09004 * 109.45402 * 305.65939 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6250 1.2793 2.6542 9 1 -0.8026 0.8731 2.6996 10 1 0.9761 1.9953 3.9068 11 1 0.8475 2.1767 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 3.4843 -0.7993 -1.1844 14 6 3.9482 -1.6501 -2.3687 15 6 3.4799 -0.9985 -3.6731 16 6 1.9577 -0.8506 -3.6421 17 6 1.4798 -0.1568 -4.9177 18 6 -0.0147 -0.2456 -5.0257 19 6 -0.7425 -1.0722 -4.3458 20 6 -0.1953 -2.0583 -3.3559 21 6 1.3101 -2.2374 -3.5652 22 6 1.5488 -0.0266 -2.4208 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.9034 -0.5276 4.4376 27 1 3.9217 0.1963 -1.2590 28 1 3.8046 -1.2677 -0.2537 29 1 5.0363 -1.7164 -2.3651 30 1 3.5225 -2.6502 -2.2874 31 1 3.7678 -1.6251 -4.5172 32 1 3.9394 -0.0153 -3.7747 33 1 1.9339 -0.6392 -5.7832 34 1 1.7784 0.8912 -4.8901 35 1 -0.5139 0.4247 -5.7098 36 1 -1.8108 -1.0540 -4.5040 37 1 -0.6947 -3.0185 -3.4848 38 1 -0.3783 -1.6885 -2.3469 39 1 1.4889 -2.7773 -4.4951 40 1 1.7354 -2.7945 -2.7304 41 1 1.9931 0.9665 -2.4874 42 1 0.4628 0.0627 -2.3900 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246464795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:52 Heat of formation + Delta-G solvation = -3.934044 kcal Electronic energy + Delta-G solvation = -19859.895439 eV Core-core repulsion = 17224.847931 eV Total energy + Delta-G solvation = -2635.047508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34339 -38.08395 -35.73081 -34.04322 -32.00276 -31.53645 -30.92856 -27.89613 -26.41376 -25.14043 -23.96627 -22.75699 -21.56364 -19.85567 -18.93744 -17.98745 -17.36122 -16.67405 -16.24982 -15.64262 -15.46585 -15.09799 -14.84239 -14.45048 -14.41442 -14.13235 -13.94581 -13.55304 -13.24767 -13.14311 -13.00759 -12.86328 -12.55912 -12.45409 -12.18169 -11.99011 -11.78009 -11.59959 -11.46341 -11.10533 -10.93316 -10.78109 -10.72673 -10.56699 -9.73795 -8.90518 -8.28591 -6.30753 1.27287 1.32311 1.41995 1.53736 2.30126 3.04501 3.22254 3.76109 3.87227 3.95163 4.20258 4.29045 4.39705 4.45445 4.51206 4.55248 4.61431 4.62891 4.66760 4.72976 4.77874 4.81886 4.85477 4.94213 5.01997 5.06566 5.10312 5.16205 5.17594 5.26785 5.29326 5.38987 5.41338 5.50096 5.57186 5.66075 5.72122 5.93301 6.07732 6.19359 6.46329 6.75356 6.78735 7.34038 8.87509 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.007697 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.607806 B = 3636.742974 C = 4144.600653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.185 3.815 3 H -0.021 1.021 4 C -0.502 4.502 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.265 1.265 10 H -0.298 1.298 11 H -0.258 1.258 12 N -0.521 5.521 13 C 0.063 3.937 14 C -0.110 4.110 15 C -0.102 4.102 16 C -0.051 4.051 17 C -0.076 4.076 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.095 4.095 21 C -0.093 4.093 22 C 0.062 3.938 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.265 0.735 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.009 0.991 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 1.273 -19.105 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 H -0.004 1.004 4 C -0.541 4.541 5 H 0.064 0.936 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.226 1.226 11 H -0.182 1.182 12 N -0.246 5.246 13 C -0.065 4.065 14 C -0.148 4.148 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.114 4.114 18 C -0.178 4.178 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.066 4.066 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.754 0.799 -18.917 19.133 hybrid contribution -0.083 1.428 1.109 1.810 sum -2.837 2.227 -17.809 18.170 Atomic orbital electron populations 1.22073 0.96999 1.01324 0.99063 1.19469 0.92566 0.91216 0.89040 1.00351 1.21228 1.30677 1.12289 0.89876 0.93648 1.25718 0.97401 0.99709 0.95491 1.70023 1.47808 1.42427 0.98468 0.85909 0.79552 0.80315 0.76924 1.19061 1.22564 1.18204 1.61789 1.09844 1.51751 1.01182 1.21953 0.87968 0.97485 0.99125 1.21610 1.00270 0.99248 0.93664 1.21579 0.94238 1.00822 0.97346 1.20512 0.95304 0.95822 0.93456 1.20470 0.93336 1.00747 0.96798 1.22167 0.95845 0.99318 1.00485 1.22157 0.99775 0.97866 0.97985 1.20473 0.96094 0.98347 0.98294 1.21458 0.94574 0.95795 1.01237 1.22263 1.00431 0.93943 0.89919 0.94945 0.92423 0.92435 0.92591 0.97230 0.92883 0.90779 0.91547 0.89817 0.92263 0.89111 0.91052 0.86723 0.87434 0.91037 0.92047 0.91464 0.92262 0.97321 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.94 8.45 71.98 0.61 -5.34 16 2 C 0.19 8.90 1.66 44.17 0.07 8.97 16 3 H -0.02 -1.06 7.20 -2.39 -0.02 -1.08 16 4 C -0.50 -28.92 8.44 25.60 0.22 -28.70 16 5 H 0.05 2.90 6.64 -2.91 -0.02 2.88 16 6 C 0.01 0.82 5.45 84.66 0.46 1.28 16 7 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 8 Si 0.95 45.93 24.37 68.60 1.67 47.60 16 9 H -0.26 -12.19 6.87 99.48 0.68 -11.51 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 11 H -0.26 -11.89 6.53 99.48 0.65 -11.24 16 12 N -0.52 -21.32 3.96 -875.71 -3.47 -24.79 16 13 C 0.06 2.49 5.20 86.32 0.45 2.94 16 14 C -0.11 -3.28 5.76 30.65 0.18 -3.10 16 15 C -0.10 -2.50 4.78 30.63 0.15 -2.35 16 16 C -0.05 -1.31 0.52 -52.19 -0.03 -1.34 16 17 C -0.08 -1.58 4.89 29.62 0.14 -1.44 16 18 C -0.16 -3.33 9.43 27.06 0.26 -3.08 16 19 C -0.16 -3.62 9.15 27.04 0.25 -3.38 16 20 C -0.10 -2.50 5.49 29.66 0.16 -2.34 16 21 C -0.09 -2.45 4.54 30.69 0.14 -2.31 16 22 C 0.06 2.08 3.29 86.27 0.28 2.36 16 23 H 0.03 1.44 3.27 -2.39 -0.01 1.43 16 24 H 0.06 2.14 6.28 -2.39 -0.02 2.13 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 2.48 6.02 -2.39 -0.01 2.46 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.04 6.46 -2.39 -0.02 2.02 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.07 1.44 8.11 -2.38 -0.02 1.42 16 35 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.11 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.94 6.90 -2.38 -0.02 1.93 16 39 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 40 H 0.06 1.83 5.96 -2.39 -0.01 1.82 16 41 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.08 2.58 3.55 -2.38 -0.01 2.57 16 Total: -1.00 -64.10 297.88 2.74 -61.36 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.90 Total: 12.93 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.34 Total: -37.82 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.17 Total: -84.07 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.67 Total: 47.60 kcal Total: -64.10 2.74 -61.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246464795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.428 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds