Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46788 * 2 1 4 4 C 1.50696 * 109.47107 * 240.00149 * 2 1 3 5 5 H 1.07999 * 120.00368 * 335.14749 * 4 2 1 6 6 C 1.37882 * 119.99872 * 155.14893 * 4 2 1 7 7 N 1.31513 * 119.99569 * 185.06516 * 6 4 2 8 8 Si 1.86800 * 120.00090 * 5.06047 * 6 4 2 9 9 H 1.48497 * 109.46941 * 84.74261 * 8 6 4 10 10 H 1.48500 * 109.46852 * 204.74201 * 8 6 4 11 11 H 1.48504 * 109.47054 * 324.74295 * 8 6 4 12 12 N 1.46902 * 109.47006 * 119.99793 * 2 1 3 13 13 C 1.46846 * 110.99623 * 64.18640 * 12 2 1 14 14 C 1.53034 * 109.56754 * 174.12697 * 13 12 2 15 15 C 1.53151 * 109.26544 * 59.21905 * 14 13 12 16 16 C 1.52971 * 109.16176 * 302.53228 * 15 14 13 17 17 C 1.52865 * 109.76600 * 178.03416 * 16 15 14 18 18 C 1.50098 * 110.15235 * 168.94590 * 17 16 15 19 19 C 1.29438 * 124.04670 * 343.34833 * 18 17 16 20 20 C 1.50059 * 124.13347 * 359.92547 * 19 18 17 21 21 C 1.53042 * 110.20467 * 343.30828 * 20 19 18 22 22 C 1.46871 * 111.00096 * 300.00236 * 12 2 1 23 23 H 1.09002 * 109.46974 * 295.28425 * 1 2 3 24 24 H 1.08996 * 109.47169 * 55.28197 * 1 2 3 25 25 H 1.08996 * 109.47231 * 175.28250 * 1 2 3 26 26 H 0.97003 * 119.99892 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.45389 * 294.15052 * 13 12 2 28 28 H 1.08996 * 109.46102 * 54.11715 * 13 12 2 29 29 H 1.08999 * 109.51302 * 179.16177 * 14 13 12 30 30 H 1.09010 * 109.50532 * 299.24749 * 14 13 12 31 31 H 1.08996 * 109.52919 * 182.62832 * 15 14 13 32 32 H 1.09008 * 109.51948 * 62.43267 * 15 14 13 33 33 H 1.09000 * 109.35514 * 48.73767 * 17 16 15 34 34 H 1.08998 * 109.35819 * 289.16104 * 17 16 15 35 35 H 1.08002 * 117.97385 * 163.06095 * 18 17 16 36 36 H 1.08003 * 117.93354 * 180.20555 * 19 18 17 37 37 H 1.09005 * 109.49131 * 222.97824 * 20 19 18 38 38 H 1.08998 * 109.05019 * 103.36326 * 20 19 18 39 39 H 1.08999 * 109.63412 * 289.39261 * 21 20 19 40 40 H 1.09000 * 109.80745 * 168.88145 * 21 20 19 41 41 H 1.08994 * 109.46865 * 65.62884 * 22 12 2 42 42 H 1.09001 * 109.46204 * 305.65792 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4122 -1.4468 -1.7199 6 6 3.2837 -0.4201 -1.7315 7 7 3.6828 -0.9652 -2.8598 8 14 4.4120 0.7472 -0.8076 9 1 5.1544 -0.0043 0.2361 10 1 5.3760 1.3590 -1.7571 11 1 3.6025 1.8150 -0.1672 12 7 2.0197 -0.6925 1.1995 13 6 1.6322 -2.1088 1.1844 14 6 2.2795 -2.8299 2.3688 15 6 1.8213 -2.1711 3.6732 16 6 2.1892 -0.6866 3.6423 17 6 1.6943 -0.0047 4.9177 18 6 2.2762 1.3747 5.0258 19 6 3.2982 1.7853 4.3458 20 6 4.0455 0.9407 3.3560 21 6 3.7125 -0.5383 3.5653 22 6 1.5487 -0.0265 2.4209 23 1 -0.3633 0.4389 0.9292 24 1 -0.3633 0.5853 -0.8447 25 1 -0.3633 -1.0241 -0.0845 26 1 4.5633 -0.7613 -3.2121 27 1 0.5477 -2.1893 1.2591 28 1 1.9670 -2.5670 0.2538 29 1 1.9794 -3.8778 2.3653 30 1 3.3645 -2.7618 2.2876 31 1 2.3161 -2.6514 4.5174 32 1 0.7411 -2.2767 3.7747 33 1 1.9977 -0.5936 5.7833 34 1 0.6067 0.0629 4.8926 35 1 1.8107 2.0688 5.7098 36 1 3.6372 2.7985 4.5041 37 1 5.1173 1.0916 3.4850 38 1 3.7579 1.2365 2.3471 39 1 4.1620 -0.8868 4.4952 40 1 4.0962 -1.1251 2.7307 41 1 0.4643 -0.1143 2.4874 42 1 1.8264 1.0271 2.3902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246464809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = 4.273472 kcal Electronic energy + Delta-G solvation = -20139.203725 eV Core-core repulsion = 17504.512122 eV Total energy + Delta-G solvation = -2634.691603 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04514 -36.71482 -33.97825 -31.99422 -30.62806 -30.38220 -28.93151 -26.04566 -25.25563 -23.34155 -22.84640 -21.75989 -19.61764 -18.32340 -16.97060 -16.60100 -15.99768 -14.77767 -14.44914 -14.31408 -13.93465 -13.65629 -13.53977 -13.00018 -12.73052 -12.46652 -12.30257 -12.15066 -11.90499 -11.76424 -11.65973 -11.28252 -11.09870 -10.68607 -10.62999 -10.37037 -10.19046 -9.95518 -9.74346 -9.64621 -9.49159 -9.35491 -8.89689 -8.74487 -8.52395 -7.08323 -6.02916 -4.06156 2.50356 3.44541 3.49196 3.56183 4.54859 4.75226 4.91219 5.02792 5.15180 5.41457 5.47267 5.57390 5.59402 5.63180 5.77261 5.83315 5.85683 5.98609 6.04639 6.13004 6.16273 6.26534 6.27665 6.29376 6.33707 6.37590 6.43057 6.49124 6.56806 6.57879 6.73795 6.76954 6.88592 6.97132 6.99021 7.11228 7.18063 7.29301 7.70757 8.19243 8.39909 8.65638 8.99981 9.62172 11.08280 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.009860 C = 0.008523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.000258 B = 2838.951018 C = 3284.480342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 H 0.049 0.951 4 C -0.502 4.502 5 H 0.070 0.930 6 C 0.081 3.919 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.268 1.268 10 H -0.304 1.304 11 H -0.269 1.269 12 N -0.527 5.527 13 C 0.067 3.933 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.053 4.053 17 C -0.078 4.078 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.096 4.096 21 C -0.097 4.097 22 C 0.060 3.940 23 H 0.029 0.971 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 1.474 14.980 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.088 0.912 6 C -0.122 4.122 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.193 1.193 10 H -0.231 1.231 11 H -0.194 1.194 12 N -0.252 5.252 13 C -0.061 4.061 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.054 4.054 17 C -0.115 4.115 18 C -0.180 4.180 19 C -0.165 4.165 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.069 4.069 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.039 0.961 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.432 1.491 14.839 14.982 hybrid contribution -0.288 0.685 0.488 0.889 sum -1.720 2.175 15.327 15.576 Atomic orbital electron populations 1.22320 1.00493 1.00517 0.99057 1.19918 0.89709 0.95623 0.88623 0.93325 1.20843 1.01656 1.24049 1.07499 0.91211 1.25025 0.97712 0.95532 0.93941 1.69941 1.19857 1.44540 1.19430 0.86570 0.80155 0.81347 0.79323 1.19327 1.23146 1.19448 1.62702 1.59471 1.01752 1.01290 1.21823 0.95765 0.89943 0.98570 1.21685 1.01557 0.97896 0.94585 1.21567 1.00085 0.94758 0.97845 1.20524 0.96057 0.94709 0.94104 1.20452 0.99737 0.93692 0.97622 1.21956 0.97943 0.97512 1.00573 1.22112 0.97306 0.99299 0.97788 1.20533 0.98651 0.95076 0.99048 1.21510 0.94723 0.95874 1.01301 1.22121 0.95804 0.98327 0.90610 0.95239 0.93281 0.93669 0.92767 0.96665 0.89148 0.92746 0.91314 0.92814 0.92806 0.91367 0.91654 0.88669 0.88700 0.91936 0.89843 0.93338 0.89972 0.96072 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.49 37.16 0.32 -3.08 16 2 C 0.17 3.85 1.78 -68.86 -0.12 3.73 16 3 H 0.05 1.19 5.74 -51.93 -0.30 0.89 16 4 C -0.50 -13.69 7.35 -34.44 -0.25 -13.94 16 5 H 0.07 2.08 8.05 -52.49 -0.42 1.65 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 8 Si 0.90 22.34 27.07 -169.99 -4.60 17.74 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 11 H -0.27 -6.47 6.14 56.52 0.35 -6.12 16 12 N -0.53 -10.89 3.66 -228.15 -0.83 -11.73 16 13 C 0.07 1.31 4.76 -3.84 -0.02 1.30 16 14 C -0.12 -1.94 5.76 -26.64 -0.15 -2.10 16 15 C -0.10 -1.51 4.78 -26.67 -0.13 -1.64 16 16 C -0.05 -0.81 0.52 -154.51 -0.08 -0.89 16 17 C -0.08 -1.01 4.89 -28.24 -0.14 -1.15 16 18 C -0.16 -2.11 9.43 -35.88 -0.34 -2.45 16 19 C -0.15 -2.05 9.15 -35.90 -0.33 -2.38 16 20 C -0.10 -1.53 5.49 -28.17 -0.15 -1.69 16 21 C -0.10 -1.53 4.54 -26.58 -0.12 -1.65 16 22 C 0.06 1.06 2.98 -3.89 -0.01 1.05 16 23 H 0.03 0.54 6.29 -51.93 -0.33 0.22 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.92 6.87 -51.93 -0.36 0.57 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.29 6.82 -51.93 -0.35 -0.06 16 28 H 0.09 2.04 6.75 -51.93 -0.35 1.69 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.18 6.46 -51.92 -0.34 0.85 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.06 0.82 8.11 -51.93 -0.42 0.39 16 35 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.09 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.56 6.70 -51.93 -0.35 1.21 16 39 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.08 1.48 5.96 -51.93 -0.31 1.17 16 41 H 0.02 0.38 6.51 -51.93 -0.34 0.04 16 42 H 0.07 1.23 5.66 -51.93 -0.29 0.94 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -28.36 301.71 -8.89 -37.25 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.15 Total: 1.31 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.63 Total: -22.67 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.06 Total: -38.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.60 Total: 17.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.36 -8.89 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246464809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.521 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds