Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47153 * 239.99662 * 3 2 1 5 5 H 1.48500 * 109.47412 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47375 * 119.99556 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99630 * 179.72830 * 7 2 1 9 9 C 1.50698 * 119.99855 * 0.02562 * 7 2 1 10 10 F 1.39900 * 109.47436 * 300.89072 * 9 7 2 11 11 F 1.39899 * 109.47123 * 60.89994 * 9 7 2 12 12 C 1.50707 * 109.46755 * 180.89496 * 9 7 2 13 13 C 1.38215 * 120.00397 * 246.13467 * 12 9 7 14 14 C 1.38324 * 120.01084 * 179.77253 * 13 12 9 15 15 Cl 1.73603 * 119.98854 * 180.25727 * 14 13 12 16 16 C 1.38376 * 120.02569 * 0.50321 * 14 13 12 17 17 C 1.38165 * 120.01331 * 359.75125 * 16 14 13 18 18 C 1.38431 * 120.00569 * 66.41239 * 12 9 7 19 19 F 1.35091 * 120.01314 * 0.02562 * 18 12 9 20 20 H 0.97005 * 120.00401 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.99556 * 0.02817 * 13 12 9 22 22 H 1.07997 * 119.99677 * 179.72191 * 16 14 13 23 23 H 1.07995 * 120.00945 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 -0.0039 9 6 1.2511 -2.4991 0.0005 10 9 0.4310 -2.5642 1.1321 11 9 0.4628 -2.5825 -1.1522 12 6 2.2303 -3.6444 0.0234 13 6 2.3266 -4.4932 -1.0632 14 6 3.2286 -5.5417 -1.0443 15 17 3.3538 -6.6034 -2.4121 16 6 4.0277 -5.7476 0.0665 17 6 3.9286 -4.9029 1.1553 18 6 3.0294 -3.8500 1.1349 19 9 2.9313 -3.0243 2.1996 20 1 -0.4851 0.8401 -0.0004 21 1 1.7003 -4.3353 -1.9288 22 1 4.7287 -6.5691 0.0825 23 1 4.5520 -5.0640 2.0224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259044607.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = -133.506515 kcal Electronic energy + Delta-G solvation = -16208.105377 eV Core-core repulsion = 12825.240570 eV Total energy + Delta-G solvation = -3382.864807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.007 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.36114 -47.02740 -45.07802 -38.76262 -36.27665 -32.99015 -31.57978 -30.04151 -27.03810 -23.76614 -22.47869 -20.87425 -17.51386 -17.37022 -16.41784 -16.34414 -15.12120 -15.04034 -14.87921 -14.44142 -13.91830 -13.90953 -13.03435 -13.00789 -12.41960 -11.92395 -11.88950 -11.51250 -11.41206 -11.21787 -11.02004 -10.99332 -10.92201 -10.50945 -10.17433 -9.26449 -8.88162 -8.77401 -8.23168 -6.33596 -4.61570 1.22548 1.33311 2.22796 3.20919 3.23992 3.26975 3.66429 4.18620 4.54390 4.77106 4.87890 5.00497 5.17863 5.46217 5.80185 5.90653 6.12194 6.26881 6.36537 6.51623 6.94970 7.22422 7.36303 7.57495 8.46250 9.19210 10.71312 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.007948 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.612206 B = 3521.860609 C = 3783.820534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.444 3.556 10 F -0.211 7.211 11 F -0.215 7.215 12 C -0.133 4.133 13 C -0.063 4.063 14 C -0.054 4.054 15 Cl -0.074 7.074 16 C -0.087 4.087 17 C -0.155 4.155 18 C 0.142 3.858 19 F -0.116 7.116 20 H 0.272 0.728 21 H 0.148 0.852 22 H 0.139 0.861 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -9.480 -0.541 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.623 4.623 8 H 0.097 0.903 9 C 0.408 3.592 10 F -0.192 7.192 11 F -0.196 7.196 12 C -0.136 4.136 13 C -0.082 4.082 14 C -0.081 4.081 15 Cl -0.046 7.046 16 C -0.106 4.106 17 C -0.174 4.174 18 C 0.122 3.878 19 F -0.094 7.094 20 H 0.082 0.918 21 H 0.166 0.834 22 H 0.156 0.844 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.823 -9.428 -0.619 11.655 hybrid contribution 0.258 0.855 0.024 0.894 sum 7.081 -8.573 -0.596 11.135 Atomic orbital electron populations 1.70025 1.06273 1.28213 1.43889 1.25103 0.95003 1.00160 0.92001 0.86304 0.79524 0.81019 0.79226 1.19517 1.20651 1.19435 1.21341 0.93865 0.88278 1.58817 0.90332 1.16843 0.79610 0.91442 0.71268 1.92933 1.75865 1.97340 1.53045 1.92874 1.77753 1.97161 1.51794 1.21102 1.00537 0.98087 0.93827 1.20873 0.96812 0.91622 0.98907 1.20782 1.01257 0.95607 0.90448 1.98344 1.97580 1.64919 1.43729 1.20768 0.98778 0.99633 0.91376 1.21015 1.00530 0.95596 1.00298 1.17440 0.96217 0.89634 0.84532 1.91573 1.94785 1.70069 1.52964 0.91773 0.83402 0.84355 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.94 12.62 55.43 0.70 -24.24 14 2 C 0.09 2.43 5.39 -17.82 -0.10 2.34 14 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 14 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 14 7 C -0.59 -16.30 8.00 -34.44 -0.28 -16.57 14 8 H 0.08 2.10 7.74 -52.49 -0.41 1.70 14 9 C 0.44 11.83 1.49 -29.03 -0.04 11.79 14 10 F -0.21 -6.01 15.95 2.25 0.04 -5.97 14 11 F -0.21 -5.89 15.34 2.25 0.03 -5.86 14 12 C -0.13 -2.91 4.98 -104.56 -0.52 -3.43 14 13 C -0.06 -1.19 9.21 -39.56 -0.36 -1.55 14 14 C -0.05 -0.84 6.32 -39.50 -0.25 -1.09 14 15 Cl -0.07 -1.00 28.95 -51.86 -1.50 -2.50 14 16 C -0.09 -1.19 9.83 -39.56 -0.39 -1.58 14 17 C -0.16 -2.33 10.03 -39.52 -0.40 -2.72 14 18 C 0.14 2.79 6.98 -39.42 -0.28 2.51 14 19 F -0.12 -2.50 15.99 2.25 0.04 -2.46 14 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 14 21 H 0.15 2.75 7.18 -52.49 -0.38 2.37 14 22 H 0.14 1.43 8.06 -52.49 -0.42 1.00 14 23 H 0.14 1.67 8.06 -52.49 -0.42 1.25 14 LS Contribution 241.26 15.07 3.64 3.64 Total: -1.00 -30.13 241.26 -5.45 -35.58 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -0.76 Total: -3.80 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.61 Total: -10.31 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.70 Total: -24.24 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 0.11 Total: -14.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.13 -5.45 -35.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259044607.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.924 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds