Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30541 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48503 * 109.46914 * 274.98437 * 3 2 1 5 5 H 1.48506 * 109.47203 * 34.98312 * 3 2 1 6 6 H 1.48495 * 109.47133 * 154.98276 * 3 2 1 7 7 C 1.40327 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00236 * 173.92796 * 7 2 1 9 9 C 1.41808 * 120.00105 * 354.19622 * 7 2 1 10 10 O 1.21803 * 119.99933 * 6.48344 * 9 7 2 11 11 C 1.47621 * 120.00078 * 186.47850 * 9 7 2 12 12 C 1.39502 * 120.04665 * 359.72709 * 11 9 7 13 13 C 1.38937 * 119.34747 * 179.77203 * 12 11 9 14 14 C 1.46881 * 134.28910 * 180.19797 * 13 12 11 15 15 C 1.33937 * 106.15421 * 180.25614 * 14 13 12 16 16 O 1.34472 * 110.23338 * 0.02562 * 15 14 13 17 17 C 1.34730 * 110.96757 * 359.97438 * 16 15 14 18 18 C 1.39185 * 133.24553 * 180.02562 * 17 16 15 19 19 C 1.36531 * 120.28430 * 179.97438 * 18 17 16 20 20 Cl 1.73603 * 119.68265 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00444 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.32217 * 0.02562 * 12 11 9 23 23 H 1.07998 * 126.92675 * 0.22323 * 14 13 12 24 24 H 1.08000 * 124.88138 * 179.97438 * 15 14 13 25 25 H 1.08004 * 119.85615 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.3815 2.1072 -1.3948 5 1 1.4934 2.6200 0.8027 6 1 3.5856 1.4121 0.5921 7 6 2.0071 -1.2153 0.0005 8 1 3.0825 -1.2180 -0.0984 9 6 1.3035 -2.4402 0.1253 10 8 0.0856 -2.4469 0.1131 11 6 2.0472 -3.7071 0.2698 12 6 3.4422 -3.7012 0.2780 13 6 4.1275 -4.9015 0.4196 14 6 5.5479 -5.2713 0.4746 15 6 5.5811 -6.6025 0.6190 16 8 4.3313 -7.0972 0.6588 17 6 3.4191 -6.1126 0.5428 18 6 2.0274 -6.0991 0.5267 19 6 1.3518 -4.9202 0.3927 20 17 -0.3842 -4.9216 0.3739 21 1 -0.4851 0.8400 -0.0004 22 1 3.9841 -2.7722 0.1794 23 1 6.3949 -4.6044 0.4109 24 1 6.4820 -7.1935 0.6921 25 1 1.4796 -7.0251 0.6206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259502117.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -30.586930 kcal Electronic energy + Delta-G solvation = -15220.493809 eV Core-core repulsion = 12383.948670 eV Total energy + Delta-G solvation = -2836.545139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.36858 -39.72934 -37.78699 -37.01667 -34.72557 -33.70138 -31.90205 -30.04825 -28.67622 -25.06976 -23.64037 -22.29781 -21.58175 -18.91625 -18.27069 -17.90027 -17.50182 -17.09054 -16.12310 -15.34546 -15.22860 -14.76630 -14.68250 -14.47163 -13.70021 -13.62487 -13.41999 -13.23562 -12.68744 -12.47861 -12.19134 -12.12878 -11.93827 -11.73624 -11.00771 -10.94340 -9.49871 -9.37536 -9.13766 -8.27788 -7.00932 -0.13580 -0.01617 1.10711 1.38476 1.40542 1.44741 1.57025 2.03924 2.16133 2.23183 2.70153 3.52647 3.69789 3.72107 3.95408 4.07740 4.29465 4.48949 4.71075 4.77960 4.98654 5.10860 5.25227 5.31324 5.48643 5.53323 5.98858 6.13071 6.74082 6.78899 8.29118 8.52354 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.007973 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.845918 B = 3511.126639 C = 4676.537704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.245 1.245 7 C -0.543 4.543 8 H 0.092 0.908 9 C 0.364 3.636 10 O -0.557 6.557 11 C -0.152 4.152 12 C -0.036 4.036 13 C -0.151 4.151 14 C -0.215 4.215 15 C 0.021 3.979 16 O -0.199 6.199 17 C 0.046 3.954 18 C -0.112 4.112 19 C -0.004 4.004 20 Cl -0.047 7.047 21 H 0.281 0.719 22 H 0.148 0.852 23 H 0.187 0.813 24 H 0.263 0.737 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.682 -8.893 1.216 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.110 0.890 9 C 0.261 3.739 10 O -0.448 6.448 11 C -0.154 4.154 12 C -0.054 4.054 13 C -0.152 4.152 14 C -0.234 4.234 15 C -0.043 4.043 16 O -0.100 6.100 17 C -0.002 4.002 18 C -0.131 4.131 19 C -0.031 4.031 20 Cl -0.018 7.018 21 H 0.091 0.909 22 H 0.166 0.834 23 H 0.204 0.796 24 H 0.279 0.721 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.684 -9.148 1.242 14.891 hybrid contribution -0.248 0.875 -0.051 0.911 sum 11.437 -8.273 1.191 14.165 Atomic orbital electron populations 1.70098 1.09796 1.29728 1.31734 1.27149 0.95431 1.05215 0.91356 0.85092 0.79328 0.75121 0.79454 1.18511 1.19550 1.16823 1.21366 0.96353 0.92276 1.47411 0.88966 1.18610 0.88685 0.87183 0.79465 1.90547 1.15861 1.88359 1.50075 1.21460 0.95008 0.96313 1.02625 1.20919 0.91609 0.97610 0.95291 1.20436 0.95662 0.93302 1.05821 1.22878 0.93931 0.96729 1.09864 1.24974 0.85496 0.94495 0.99304 1.83973 1.15492 1.34802 1.75758 1.19445 0.90650 0.86681 1.03455 1.19323 0.89488 0.97807 1.06453 1.20515 0.85981 0.93693 1.02913 1.98358 1.08271 1.98717 1.96461 0.90862 0.83437 0.79568 0.72142 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.87 11.76 21.88 0.26 -45.62 15 2 C 0.03 1.47 5.49 85.39 0.47 1.94 15 3 Si 0.99 38.76 29.57 68.60 2.03 40.79 15 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.54 -29.86 8.83 23.66 0.21 -29.65 15 8 H 0.09 4.49 6.06 -2.91 -0.02 4.47 15 9 C 0.36 21.06 6.90 25.63 0.18 21.23 15 10 O -0.56 -35.81 12.49 -4.68 -0.06 -35.87 15 11 C -0.15 -7.37 5.89 -19.98 -0.12 -7.49 15 12 C -0.04 -1.45 9.49 22.74 0.22 -1.24 15 13 C -0.15 -5.13 6.39 -20.21 -0.13 -5.26 15 14 C -0.22 -4.96 11.14 23.55 0.26 -4.69 15 15 C 0.02 0.38 11.95 66.84 0.80 1.18 15 16 O -0.20 -5.31 10.57 -8.36 -0.09 -5.40 15 17 C 0.05 1.54 7.42 23.14 0.17 1.71 15 18 C -0.11 -4.05 9.75 22.10 0.22 -3.84 15 19 C 0.00 -0.17 6.31 22.39 0.14 -0.03 15 20 Cl -0.05 -2.16 25.94 -2.72 -0.07 -2.23 15 21 H 0.28 14.74 8.29 -92.71 -0.77 13.97 15 22 H 0.15 5.62 6.22 -2.91 -0.02 5.60 15 23 H 0.19 3.07 8.06 -2.91 -0.02 3.05 15 24 H 0.26 1.55 8.06 -2.91 -0.02 1.53 15 25 H 0.16 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -73.56 245.95 5.73 -67.83 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.25 Total: 6.63 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 2.41 Total: -26.13 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.26 Total: -45.62 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.15 Total: -41.27 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Total: -73.56 5.73 -67.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502117.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.240 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds