Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86802 * 119.99615 * 2 1 4 4 H 1.48507 * 109.46472 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47163 * 299.99482 * 3 2 1 6 6 H 1.48496 * 109.47421 * 59.99936 * 3 2 1 7 7 C 1.40375 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.41273 * 119.99927 * 359.97438 * 7 2 1 10 10 O 1.21954 * 120.00262 * 0.02562 * 9 7 2 11 11 C 1.47289 * 119.99603 * 180.02562 * 9 7 2 12 12 C 1.40423 * 120.14353 * 0.02562 * 11 9 7 13 13 C 1.35429 * 120.49752 * 180.02562 * 12 11 9 14 14 C 1.42078 * 120.82094 * 359.97438 * 13 12 11 15 15 C 1.40396 * 128.63953 * 179.97438 * 14 13 12 16 16 C 1.32801 * 115.80796 * 179.97438 * 15 14 13 17 17 S 1.75489 * 110.74787 * 359.97438 * 16 15 14 18 18 C 1.40027 * 118.90434 * 359.97438 * 14 13 12 19 19 C 1.39373 * 120.07421 * 0.03447 * 18 14 13 20 20 F 1.35104 * 120.00781 * 180.02562 * 19 18 14 21 21 H 0.97003 * 120.00025 * 0.02562 * 1 2 3 22 22 H 1.07992 * 119.75462 * 0.02591 * 12 11 9 23 23 H 1.07998 * 119.59014 * 180.02562 * 13 12 11 24 24 H 1.08001 * 122.09865 * 0.02562 * 15 14 13 25 25 H 1.08003 * 124.62761 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6991 1.3464 0.0006 5 1 1.8804 2.3964 -1.2125 6 1 1.8803 2.3965 1.2124 7 6 2.0071 -1.2157 0.0005 8 1 3.0870 -1.2157 0.0010 9 6 1.3007 -2.4391 0.0016 10 8 0.0811 -2.4392 0.0016 11 6 2.0372 -3.7147 0.0028 12 6 3.4414 -3.7181 0.0033 13 6 4.1259 -4.8867 0.0039 14 6 3.4410 -6.1315 0.0044 15 6 3.9791 -7.4282 0.0045 16 6 3.0965 -8.4204 0.0056 17 16 1.4571 -7.7943 0.0074 18 6 2.0407 -6.1335 0.0050 19 6 1.3405 -4.9284 0.0042 20 9 -0.0105 -4.9319 0.0053 21 1 -0.4850 0.8401 -0.0004 22 1 3.9797 -2.7819 0.0033 23 1 5.2058 -4.8722 0.0047 24 1 5.0441 -7.6075 0.0045 25 1 3.3526 -9.4697 0.0062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259551237.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -63.472408 kcal Electronic energy + Delta-G solvation = -15175.879096 eV Core-core repulsion = 12352.324432 eV Total energy + Delta-G solvation = -2823.554664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.020 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83325 -40.56056 -38.70059 -35.90473 -34.81560 -31.61073 -30.89622 -28.66478 -25.45553 -24.06576 -22.06189 -21.55689 -19.43758 -18.50259 -17.56329 -17.23610 -17.07348 -16.73906 -15.86169 -15.52022 -15.26842 -14.99050 -14.46747 -14.10513 -13.98287 -13.74600 -13.35985 -12.88087 -12.81391 -12.71171 -12.22943 -11.98198 -11.91108 -11.68301 -11.03654 -10.58978 -9.66722 -9.51698 -8.67745 -8.39175 -7.13603 -0.59654 0.11899 0.40672 1.00038 1.11913 1.39500 1.42132 1.59401 2.19688 2.20131 2.68552 3.21815 3.62455 3.68844 3.93227 4.00344 4.26308 4.46035 4.63039 4.79251 4.93133 5.05324 5.13719 5.24348 5.45400 5.47943 5.84411 5.92891 6.63271 6.70751 8.18695 8.44489 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.006351 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.936498 B = 4407.995017 C = 5044.090025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.017 3.983 3 Si 1.003 2.997 4 H -0.234 1.234 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.108 0.892 9 C 0.351 3.649 10 O -0.594 6.594 11 C -0.159 4.159 12 C -0.070 4.070 13 C -0.087 4.087 14 C -0.052 4.052 15 C -0.122 4.122 16 C -0.170 4.170 17 S 0.076 5.924 18 C -0.213 4.213 19 C 0.112 3.888 20 F -0.146 7.146 21 H 0.283 0.717 22 H 0.158 0.842 23 H 0.182 0.818 24 H 0.191 0.809 25 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 -11.443 0.011 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.156 1.156 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.126 0.874 9 C 0.251 3.749 10 O -0.489 6.489 11 C -0.164 4.164 12 C -0.090 4.090 13 C -0.107 4.107 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.304 4.304 17 S 0.339 5.661 18 C -0.328 4.328 19 C 0.088 3.912 20 F -0.125 7.125 21 H 0.094 0.906 22 H 0.176 0.824 23 H 0.199 0.801 24 H 0.208 0.792 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 11.296 -12.208 0.015 16.632 hybrid contribution 0.330 1.455 -0.002 1.491 sum 11.626 -10.753 0.013 15.836 Atomic orbital electron populations 1.70144 1.10382 1.30054 1.30868 1.27449 0.95520 1.06054 0.91189 0.84890 0.79978 0.74276 0.78767 1.15634 1.19121 1.19135 1.21402 0.96606 0.91523 1.46282 0.87442 1.18666 0.88472 0.88069 0.79649 1.90557 1.16988 1.89544 1.51769 1.21896 0.97077 0.94458 1.02983 1.21091 0.90745 1.00567 0.96571 1.21249 1.01818 0.88624 0.98983 1.18830 0.89383 0.96620 1.01321 1.20331 1.03163 0.88229 1.03337 1.25912 0.93008 1.05180 1.06309 1.84306 1.10007 0.93757 1.77992 1.22900 0.98890 0.96828 1.14200 1.17678 0.76353 0.93033 1.04104 1.91448 1.30089 1.97315 1.93610 0.90641 0.82442 0.80090 0.79196 0.77009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.33 11.72 21.89 0.26 -47.07 15 2 C 0.02 0.91 5.50 85.41 0.47 1.38 15 3 Si 1.00 38.32 29.56 68.60 2.03 40.34 15 4 H -0.23 -7.93 7.11 99.48 0.71 -7.22 15 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 15 6 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 7 C -0.53 -29.21 8.84 23.54 0.21 -29.00 15 8 H 0.11 5.03 5.99 -2.91 -0.02 5.02 15 9 C 0.35 21.40 6.88 25.40 0.17 21.58 15 10 O -0.59 -42.06 13.86 -5.17 -0.07 -42.13 15 11 C -0.16 -8.00 5.89 -19.95 -0.12 -8.12 15 12 C -0.07 -2.61 9.33 22.15 0.21 -2.40 15 13 C -0.09 -2.48 10.01 22.57 0.23 -2.25 15 14 C -0.05 -1.58 5.88 -21.37 -0.13 -1.71 15 15 C -0.12 -2.48 10.14 21.62 0.22 -2.26 15 16 C -0.17 -3.33 11.11 66.64 0.74 -2.59 15 17 S 0.08 2.26 23.29 -56.49 -1.32 0.94 15 18 C -0.21 -8.18 6.45 22.98 0.15 -8.04 15 19 C 0.11 5.52 7.32 22.96 0.17 5.69 15 20 F -0.15 -8.18 15.53 44.97 0.70 -7.48 15 21 H 0.28 15.14 8.29 -92.71 -0.77 14.38 15 22 H 0.16 5.27 6.18 -2.91 -0.02 5.26 15 23 H 0.18 3.18 8.06 -2.91 -0.02 3.16 15 24 H 0.19 2.17 8.06 -2.91 -0.02 2.15 15 25 H 0.21 2.20 8.06 -2.91 -0.02 2.17 15 Total: -1.00 -81.64 247.27 5.16 -76.48 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.25 Total: 6.64 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 2.32 Total: -27.73 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.26 Total: -47.07 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.07 Total: -42.13 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.70 Total: -7.48 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.32 Total: 0.94 kcal Total: -81.64 5.16 -76.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259551237.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.011 kcal (2) G-P(sol) polarization free energy of solvation -81.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds