Wall clock time and date at job start Mon Mar 30 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86809 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47350 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47184 * 119.99962 * 3 2 1 6 6 H 1.48501 * 109.46579 * 239.99913 * 3 2 1 7 7 C 1.40122 * 120.00252 * 180.27292 * 2 1 3 8 8 H 1.08002 * 119.99839 * 5.29652 * 7 2 1 9 9 C 1.41353 * 120.00203 * 185.29637 * 7 2 1 10 10 N 1.32698 * 128.86147 * 339.82065 * 9 7 2 11 11 O 1.20864 * 109.11692 * 179.97438 * 10 9 7 12 12 N 1.20787 * 116.39915 * 359.97438 * 11 10 9 13 13 C 1.31357 * 109.72937 * 359.72212 * 12 11 10 14 14 C 1.48162 * 128.76633 * 180.27750 * 13 12 11 15 15 C 1.39468 * 120.14353 * 173.32502 * 14 13 12 16 16 C 1.37956 * 119.87765 * 179.72175 * 15 14 13 17 17 C 1.38382 * 120.16394 * 0.52820 * 16 15 14 18 18 C 1.38287 * 120.28575 * 359.76540 * 17 16 15 19 19 C 1.38149 * 120.11321 * 359.95744 * 18 17 16 20 20 Cl 1.73605 * 120.07927 * 179.97438 * 19 18 17 21 21 H 0.96994 * 119.99861 * 174.87944 * 1 2 3 22 22 H 1.07993 * 120.05906 * 359.97147 * 15 14 13 23 23 H 1.08004 * 119.91734 * 180.27651 * 16 15 14 24 24 H 1.08005 * 119.86218 * 179.74619 * 17 16 15 25 25 H 1.07993 * 119.94451 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7466 -0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0946 1.6964 -1.2125 7 6 2.0076 -1.2135 -0.0058 8 1 1.4710 -2.1464 -0.0966 9 6 3.4166 -1.2166 0.1072 10 7 4.2732 -0.2317 -0.1317 11 8 5.3965 -0.6240 0.0804 12 7 5.5050 -1.7697 0.4471 13 6 4.3165 -2.3227 0.5315 14 6 3.9618 -3.7013 0.9423 15 6 2.6241 -4.0623 1.1017 16 6 2.2998 -5.3491 1.4789 17 6 3.2986 -6.2786 1.7098 18 6 4.6274 -5.9263 1.5597 19 6 4.9651 -4.6426 1.1769 20 17 6.6336 -4.2011 0.9894 21 1 -0.4850 -0.8367 -0.0750 22 1 1.8435 -3.3370 0.9263 23 1 1.2639 -5.6306 1.5982 24 1 3.0393 -7.2835 2.0089 25 1 5.4024 -6.6560 1.7418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259634730.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:09 Heat of formation + Delta-G solvation = 107.225730 kcal Electronic energy + Delta-G solvation = -15489.828001 eV Core-core repulsion = 12691.551618 eV Total energy + Delta-G solvation = -2798.276382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.80248 -38.91460 -36.01870 -34.68361 -33.41255 -32.45082 -30.57066 -30.10349 -26.96219 -23.71358 -22.53884 -21.31080 -20.64627 -18.36507 -17.25439 -17.17013 -16.38852 -15.24038 -14.86165 -13.99746 -13.89144 -13.59900 -13.32939 -13.25932 -12.39134 -11.54850 -11.41236 -11.31834 -11.18591 -10.93428 -10.78600 -10.23612 -10.15891 -9.89945 -9.60126 -9.24632 -9.00875 -8.57600 -8.04533 -7.52214 -5.07398 1.14497 1.45871 2.51114 2.75626 3.03394 3.34005 3.59889 3.69763 4.05970 4.09207 4.56306 4.77127 4.95547 5.07352 5.36107 5.46563 5.61136 5.71707 5.78846 6.04890 6.23792 6.46812 6.53892 6.64944 6.86233 7.04415 7.30232 7.69271 7.90679 8.36210 9.83391 10.30556 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.008948 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.508734 B = 3128.358667 C = 4131.866694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.056 3.944 3 Si 1.083 2.917 4 H -0.293 1.293 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.165 3.835 10 N -0.497 5.497 11 O 0.291 5.709 12 N -0.349 5.349 13 C -0.063 4.063 14 C 0.036 3.964 15 C -0.099 4.099 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.034 4.034 20 Cl -0.055 7.055 21 H 0.287 0.713 22 H 0.154 0.846 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -9.273 2.731 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.167 4.167 3 Si 0.909 3.091 4 H -0.221 1.221 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.116 0.884 9 C 0.019 3.981 10 N -0.255 5.255 11 O 0.084 5.916 12 N -0.066 5.066 13 C -0.222 4.222 14 C 0.034 3.966 15 C -0.118 4.118 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.134 4.134 19 C -0.062 4.062 20 Cl -0.026 7.026 21 H 0.098 0.902 22 H 0.171 0.829 23 H 0.146 0.854 24 H 0.145 0.855 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.603 -7.022 2.658 8.808 hybrid contribution -0.586 -2.469 0.031 2.538 sum 4.017 -9.492 2.690 10.652 Atomic orbital electron populations 1.70597 1.07626 1.32886 1.31376 1.27325 0.95546 1.04591 0.89246 0.83189 0.73456 0.71745 0.80692 1.22123 1.19933 1.18421 1.19947 0.87428 0.97009 1.47068 0.88368 1.22838 0.96259 0.85478 0.93485 1.75223 0.90470 1.24177 1.35663 1.84627 1.26096 1.19943 1.60927 1.74899 1.23287 0.95517 1.12926 1.23698 0.89284 0.96966 1.12270 1.17441 0.92396 0.88434 0.98360 1.21735 0.95582 0.97045 0.97452 1.21148 0.99581 0.93122 0.99555 1.21070 0.92020 0.99719 1.01209 1.20868 0.97100 0.94210 1.01265 1.21042 0.85779 0.94594 1.04823 1.98367 1.15481 1.92967 1.95753 0.90174 0.82866 0.85418 0.85537 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.34 13.65 55.56 0.76 -19.59 15 2 C 0.06 1.42 5.52 -17.33 -0.10 1.32 15 3 Si 1.08 25.41 26.02 -169.99 -4.42 20.99 15 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.26 -6.11 7.01 56.52 0.40 -5.71 15 7 C -0.48 -12.08 8.92 -37.69 -0.34 -12.41 15 8 H 0.10 2.38 5.78 -52.49 -0.30 2.08 15 9 C 0.16 4.19 6.73 -81.95 -0.55 3.64 15 10 N -0.50 -12.75 8.34 32.89 0.27 -12.47 15 11 O 0.29 7.06 11.62 27.29 0.32 7.38 15 12 N -0.35 -8.19 9.90 33.96 0.34 -7.85 15 13 C -0.06 -1.47 7.28 -79.64 -0.58 -2.05 15 14 C 0.04 0.73 5.88 -104.87 -0.62 0.11 15 15 C -0.10 -1.80 9.56 -39.23 -0.37 -2.18 15 16 C -0.12 -1.67 10.03 -39.63 -0.40 -2.07 15 17 C -0.12 -1.58 10.04 -39.51 -0.40 -1.98 15 18 C -0.12 -1.68 9.82 -39.60 -0.39 -2.06 15 19 C -0.03 -0.62 6.35 -39.12 -0.25 -0.86 15 20 Cl -0.05 -0.98 26.40 -51.86 -1.37 -2.35 15 21 H 0.29 6.88 8.72 -40.82 -0.36 6.52 15 22 H 0.15 2.97 4.65 -52.49 -0.24 2.72 15 23 H 0.13 1.47 8.06 -52.48 -0.42 1.05 15 24 H 0.13 1.21 8.06 -52.48 -0.42 0.79 15 25 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 240.61 15.07 3.63 3.63 Total: -1.00 -27.15 240.61 -5.44 -32.59 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -0.97 Total: -3.78 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -3.99 Total: -18.54 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 1.37 Total: -39.91 kcal Atomic # 8 Polarization: 7.06 SS G_CDS: 0.32 Total: 7.38 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.42 Total: 20.99 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.37 Total: -2.35 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.15 -5.44 -32.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634730.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.819 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds