Wall clock time and date at job start Mon Mar 30 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86809 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47350 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47184 * 119.99962 * 3 2 1 6 6 H 1.48501 * 109.46579 * 239.99913 * 3 2 1 7 7 C 1.40122 * 120.00252 * 180.27292 * 2 1 3 8 8 H 1.08002 * 119.99839 * 5.29652 * 7 2 1 9 9 C 1.41353 * 120.00203 * 185.29637 * 7 2 1 10 10 N 1.32698 * 128.86147 * 339.82065 * 9 7 2 11 11 O 1.20864 * 109.11692 * 179.97438 * 10 9 7 12 12 N 1.20787 * 116.39915 * 359.97438 * 11 10 9 13 13 C 1.31357 * 109.72937 * 359.72212 * 12 11 10 14 14 C 1.48162 * 128.76633 * 180.27750 * 13 12 11 15 15 C 1.39468 * 120.14353 * 173.32502 * 14 13 12 16 16 C 1.37956 * 119.87765 * 179.72175 * 15 14 13 17 17 C 1.38382 * 120.16394 * 0.52820 * 16 15 14 18 18 C 1.38287 * 120.28575 * 359.76540 * 17 16 15 19 19 C 1.38149 * 120.11321 * 359.95744 * 18 17 16 20 20 Cl 1.73605 * 120.07927 * 179.97438 * 19 18 17 21 21 H 0.96994 * 119.99861 * 174.87944 * 1 2 3 22 22 H 1.07993 * 120.05906 * 359.97147 * 15 14 13 23 23 H 1.08004 * 119.91734 * 180.27651 * 16 15 14 24 24 H 1.08005 * 119.86218 * 179.74619 * 17 16 15 25 25 H 1.07993 * 119.94451 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7466 -0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0946 1.6964 -1.2125 7 6 2.0076 -1.2135 -0.0058 8 1 1.4710 -2.1464 -0.0966 9 6 3.4166 -1.2166 0.1072 10 7 4.2732 -0.2317 -0.1317 11 8 5.3965 -0.6240 0.0804 12 7 5.5050 -1.7697 0.4471 13 6 4.3165 -2.3227 0.5315 14 6 3.9618 -3.7013 0.9423 15 6 2.6241 -4.0623 1.1017 16 6 2.2998 -5.3491 1.4789 17 6 3.2986 -6.2786 1.7098 18 6 4.6274 -5.9263 1.5597 19 6 4.9651 -4.6426 1.1769 20 17 6.6336 -4.2011 0.9894 21 1 -0.4850 -0.8367 -0.0750 22 1 1.8435 -3.3370 0.9263 23 1 1.2639 -5.6306 1.5982 24 1 3.0393 -7.2835 2.0089 25 1 5.4024 -6.6560 1.7418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259634730.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:09 Heat of formation + Delta-G solvation = 92.283257 kcal Electronic energy + Delta-G solvation = -15490.475955 eV Core-core repulsion = 12691.551618 eV Total energy + Delta-G solvation = -2798.924337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.66816 -40.19688 -37.36803 -36.56267 -35.15468 -34.35850 -31.84873 -31.52646 -28.84330 -25.25471 -23.98769 -22.96218 -22.28212 -20.25582 -19.12606 -18.74578 -17.88207 -16.72895 -16.18695 -15.75493 -15.58695 -15.14229 -14.73291 -14.64782 -14.10846 -13.31641 -13.03133 -12.86390 -12.52645 -12.49812 -12.34812 -11.89434 -11.87548 -11.60393 -11.45871 -11.11623 -10.91177 -9.84202 -9.54086 -9.47067 -7.02427 -0.25158 0.21976 0.87318 1.17585 1.29425 1.44263 1.72913 1.81667 2.19780 2.69466 2.86629 2.94543 3.36388 3.74706 3.90449 4.06232 4.26681 4.38795 4.41521 4.68335 4.75889 4.99560 5.21739 5.31691 5.44536 5.47385 5.76342 5.83784 5.97747 6.41738 7.89179 8.41730 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.008948 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.508734 B = 3128.358667 C = 4131.866694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.034 3.966 3 Si 1.107 2.893 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.489 4.489 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.510 5.510 11 O 0.271 5.729 12 N -0.351 5.351 13 C -0.048 4.048 14 C -0.012 4.012 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.044 4.044 20 Cl -0.063 7.063 21 H 0.290 0.710 22 H 0.134 0.866 23 H 0.162 0.838 24 H 0.178 0.822 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -12.046 3.601 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.186 4.186 3 Si 0.931 3.069 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.120 0.880 9 C -0.003 4.003 10 N -0.268 5.268 11 O 0.071 5.929 12 N -0.072 5.072 13 C -0.210 4.210 14 C -0.014 4.014 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.129 4.129 19 C -0.073 4.073 20 Cl -0.034 7.034 21 H 0.102 0.898 22 H 0.151 0.849 23 H 0.180 0.820 24 H 0.195 0.805 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.258 -9.755 3.515 11.209 hybrid contribution -0.472 -1.862 -0.174 1.929 sum 3.785 -11.617 3.340 12.666 Atomic orbital electron populations 1.70594 1.07640 1.33235 1.32329 1.27799 0.95859 1.05784 0.89194 0.82873 0.72971 0.71217 0.79813 1.20450 1.21034 1.19128 1.20047 0.87573 0.97336 1.47780 0.87967 1.23118 0.96657 0.86466 0.94106 1.75148 0.91007 1.24831 1.35812 1.84590 1.25535 1.20497 1.62241 1.74874 1.23356 0.95276 1.13696 1.24272 0.88536 0.98135 1.10051 1.17629 0.94140 0.87519 1.02107 1.21717 0.94203 0.98676 0.98512 1.21550 1.01930 0.91440 0.97725 1.21668 0.90669 1.01332 0.97510 1.21331 0.98929 0.93047 0.99579 1.21280 0.84964 0.95654 1.05364 1.98362 1.15980 1.93229 1.95848 0.89812 0.84857 0.82032 0.80508 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.37 13.65 21.85 0.30 -41.07 15 2 C 0.03 1.75 5.52 85.32 0.47 2.22 15 3 Si 1.11 52.10 26.02 68.60 1.78 53.88 15 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 5 H -0.28 -13.73 7.11 99.48 0.71 -13.02 15 6 H -0.27 -12.68 7.01 99.48 0.70 -11.99 15 7 C -0.49 -25.26 8.92 23.49 0.21 -25.05 15 8 H 0.10 5.06 5.78 -2.91 -0.02 5.04 15 9 C 0.14 7.43 6.73 42.60 0.29 7.71 15 10 N -0.51 -26.81 8.34 -52.57 -0.44 -27.25 15 11 O 0.27 13.54 11.62 140.96 1.64 15.18 15 12 N -0.35 -16.79 9.90 -49.85 -0.49 -17.29 15 13 C -0.05 -2.30 7.28 44.68 0.33 -1.98 15 14 C -0.01 -0.47 5.88 -20.03 -0.12 -0.59 15 15 C -0.11 -3.91 9.56 22.50 0.22 -3.70 15 16 C -0.11 -2.68 10.03 22.24 0.22 -2.46 15 17 C -0.09 -1.89 10.04 22.32 0.22 -1.67 15 18 C -0.11 -2.71 9.82 22.26 0.22 -2.49 15 19 C -0.04 -1.51 6.35 22.57 0.14 -1.37 15 20 Cl -0.06 -2.19 26.40 -2.72 -0.07 -2.26 15 21 H 0.29 13.98 8.72 -92.71 -0.81 13.17 15 22 H 0.13 5.18 4.65 -2.91 -0.01 5.17 15 23 H 0.16 2.89 8.06 -2.91 -0.02 2.87 15 24 H 0.18 1.95 8.06 -2.91 -0.02 1.92 15 25 H 0.16 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -59.71 240.61 6.12 -53.60 By element: Atomic # 1 Polarization: -6.63 SS G_CDS: 1.20 Total: -5.43 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 2.20 Total: -29.36 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -0.63 Total: -85.61 kcal Atomic # 8 Polarization: 13.54 SS G_CDS: 1.64 Total: 15.18 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.78 Total: 53.88 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.26 kcal Total: -59.71 6.12 -53.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634730.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.881 kcal (2) G-P(sol) polarization free energy of solvation -59.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds