Wall clock time and date at job start Mon Mar 30 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37329 * 122.84148 * 2 1 4 4 C 1.34066 * 115.26649 * 180.29885 * 3 2 1 5 5 S 1.75813 * 110.05007 * 359.72210 * 4 3 2 6 6 C 1.37164 * 122.84170 * 179.77441 * 2 1 3 7 7 C 1.41556 * 125.36508 * 359.97438 * 6 2 1 8 8 S 1.75664 * 125.25130 * 312.36126 * 7 6 2 9 9 C 1.75464 * 92.10630 * 179.97438 * 8 7 6 10 10 C 1.32480 * 111.43545 * 0.23148 * 9 8 7 11 11 C 1.39700 * 125.25131 * 132.33848 * 7 6 2 12 12 C 1.40512 * 123.75489 * 0.02562 * 11 7 6 13 13 H 1.08004 * 120.00070 * 333.77034 * 12 11 7 14 14 C 1.39636 * 120.00270 * 153.76890 * 12 11 7 15 15 N 1.31116 * 120.00047 * 163.32192 * 14 12 11 16 16 Si 1.86802 * 119.99924 * 343.32946 * 14 12 11 17 17 H 1.48500 * 109.47142 * 89.79414 * 16 14 12 18 18 H 1.48497 * 109.47071 * 209.79105 * 16 14 12 19 19 H 1.48499 * 109.46972 * 329.78886 * 16 14 12 20 20 H 1.09000 * 109.46729 * 264.96347 * 1 2 3 21 21 H 1.09002 * 109.47156 * 24.95877 * 1 2 3 22 22 H 1.08999 * 109.47368 * 144.95610 * 1 2 3 23 23 H 1.08000 * 122.36496 * 0.02562 * 3 2 1 24 24 H 1.07995 * 124.97548 * 179.70166 * 4 3 2 25 25 H 1.08001 * 124.28040 * 179.97438 * 9 8 7 26 26 H 1.07997 * 122.76411 * 179.73742 * 10 9 8 27 27 H 0.97002 * 119.99737 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1538 0.0000 4 6 3.5807 0.9771 -0.0063 5 16 3.9605 -0.7395 -0.0048 6 6 2.2509 -1.1524 0.0045 7 6 1.7253 -2.4668 0.0102 8 16 0.4518 -3.0449 1.0731 9 6 0.5058 -4.6518 0.3704 10 6 1.4201 -4.7319 -0.5850 11 6 2.1391 -3.5042 -0.8289 12 6 3.1464 -3.3690 -1.7992 13 1 3.3529 -2.4013 -2.2320 14 6 3.8805 -4.4858 -2.2038 15 7 4.5771 -4.4454 -3.3139 16 14 3.8700 -6.0374 -1.1637 17 1 2.7551 -6.9170 -1.5980 18 1 5.1598 -6.7541 -1.3309 19 1 3.6869 -5.6746 0.2646 20 1 -0.3633 -0.0902 1.0237 21 1 -0.3633 0.9317 -0.4336 22 1 -0.3634 -0.8413 -0.5901 23 1 1.7988 2.1342 0.0004 24 1 4.3110 1.7727 -0.0119 25 1 -0.1236 -5.4728 0.6805 26 1 1.6103 -5.6403 -1.1372 27 1 5.0873 -5.2210 -3.5948 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259713711.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:19 Heat of formation + Delta-G solvation = 29.046455 kcal Electronic energy + Delta-G solvation = -13574.009272 eV Core-core repulsion = 11320.679703 eV Total energy + Delta-G solvation = -2253.329569 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.11355 -38.01566 -35.06865 -32.48314 -30.77186 -29.28976 -26.23558 -23.82824 -23.12258 -21.12051 -19.93986 -18.56867 -17.55526 -17.03561 -16.75891 -15.72693 -15.35199 -15.16989 -14.61874 -14.21385 -13.81616 -13.45599 -13.32625 -13.13326 -12.88054 -12.69145 -12.49218 -12.38320 -12.18610 -11.82210 -11.42139 -11.25298 -11.10647 -9.87380 -9.20191 -9.04205 -8.94259 -8.59881 -6.37191 -0.16085 0.51658 1.05200 1.18087 1.27520 1.35851 1.41722 1.48936 1.75390 1.94824 2.07926 2.20866 3.13437 4.23083 4.27428 4.41168 4.62539 4.64455 4.78570 4.91346 4.99344 5.13249 5.20346 5.21983 5.34536 5.43148 5.72809 5.93521 6.00575 6.18574 6.52891 6.70080 8.09201 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.010975 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.166306 B = 2550.571291 C = 3453.197559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.175 4.175 3 C -0.118 4.118 4 C -0.257 4.257 5 S 0.046 5.954 6 C -0.040 4.040 7 C -0.330 4.330 8 S 0.054 5.946 9 C -0.177 4.177 10 C -0.197 4.197 11 C 0.071 3.929 12 C -0.424 4.424 13 H 0.062 0.938 14 C 0.048 3.952 15 N -0.830 5.830 16 Si 0.960 3.040 17 H -0.242 1.242 18 H -0.274 1.274 19 H -0.256 1.256 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.159 0.841 24 H 0.179 0.821 25 H 0.187 0.813 26 H 0.134 0.866 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 2.123 6.388 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.188 4.188 3 C -0.148 4.148 4 C -0.392 4.392 5 S 0.315 5.685 6 C -0.159 4.159 7 C -0.448 4.448 8 S 0.315 5.685 9 C -0.312 4.312 10 C -0.230 4.230 11 C 0.059 3.941 12 C -0.457 4.457 13 H 0.080 0.920 14 C -0.169 4.169 15 N -0.455 5.455 16 Si 0.783 3.217 17 H -0.167 1.167 18 H -0.200 1.200 19 H -0.180 1.180 20 H 0.085 0.915 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.176 0.824 24 H 0.196 0.804 25 H 0.204 0.796 26 H 0.152 0.848 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.220 1.947 7.325 8.674 hybrid contribution 0.094 -0.405 -1.303 1.368 sum -4.126 1.542 6.022 7.460 Atomic orbital electron populations 1.20295 0.88973 1.02142 1.01684 1.19802 0.98011 0.91266 1.09716 1.19969 0.92733 0.99229 1.02890 1.25811 1.00196 0.98313 1.14897 1.84512 1.09852 1.01557 1.72627 1.21137 0.94255 0.94751 1.05757 1.20381 1.15317 0.97667 1.11481 1.82874 1.40643 1.03660 1.41361 1.25445 1.03377 1.01408 1.00981 1.21457 1.00154 0.99112 1.02321 1.18366 0.93631 0.90538 0.91569 1.18929 1.14210 0.96338 1.16236 0.92020 1.26874 0.92756 1.02730 0.94569 1.69815 1.23046 1.33555 1.19115 0.85664 0.78439 0.77202 0.80386 1.16662 1.20017 1.17951 0.91542 0.90309 0.93206 0.82368 0.80367 0.79596 0.84833 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 9.01 71.24 0.64 -1.74 15 2 C -0.18 -6.91 5.89 -20.33 -0.12 -7.03 15 3 C -0.12 -4.07 9.93 21.10 0.21 -3.86 15 4 C -0.26 -9.05 11.22 66.87 0.75 -8.30 15 5 S 0.05 2.00 22.02 -56.49 -1.24 0.75 15 6 C -0.04 -1.84 5.65 22.84 0.13 -1.71 15 7 C -0.33 -15.51 5.55 23.44 0.13 -15.38 15 8 S 0.05 2.07 21.91 -56.49 -1.24 0.84 15 9 C -0.18 -6.51 11.05 66.69 0.74 -5.78 15 10 C -0.20 -8.54 7.63 22.69 0.17 -8.37 15 11 C 0.07 3.56 5.25 -20.82 -0.11 3.45 15 12 C -0.42 -23.09 8.66 23.16 0.20 -22.89 15 13 H 0.06 3.73 7.42 -2.91 -0.02 3.71 15 14 C 0.05 2.47 5.48 85.14 0.47 2.94 15 15 N -0.83 -43.61 13.94 21.78 0.30 -43.30 15 16 Si 0.96 39.81 24.56 68.60 1.68 41.50 15 17 H -0.24 -9.00 6.41 99.48 0.64 -8.37 15 18 H -0.27 -10.73 7.11 99.48 0.71 -10.03 15 19 H -0.26 -10.97 6.92 99.48 0.69 -10.28 15 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.08 2.14 8.11 -2.39 -0.02 2.12 15 22 H 0.05 1.81 7.43 -2.39 -0.02 1.79 15 23 H 0.16 4.24 8.06 -2.91 -0.02 4.22 15 24 H 0.18 5.02 8.06 -2.91 -0.02 5.00 15 25 H 0.19 5.15 8.06 -2.91 -0.02 5.13 15 26 H 0.13 5.48 4.49 -2.91 -0.01 5.47 15 27 H 0.30 13.94 8.30 -92.71 -0.77 13.17 15 Total: -1.00 -58.76 256.27 3.82 -54.94 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.10 Total: 13.94 kcal Atomic # 6 Polarization: -71.88 SS G_CDS: 3.21 Total: -68.67 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.30 Total: -43.30 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.68 Total: 41.50 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.48 Total: 1.59 kcal Total: -58.76 3.82 -54.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259713711.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.987 kcal (2) G-P(sol) polarization free energy of solvation -58.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds