Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86809 * 119.99819 * 2 1 4 4 H 1.48494 * 109.46942 * 239.99572 * 3 2 1 5 5 H 1.48498 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46974 * 119.99598 * 3 2 1 7 7 C 1.40354 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.39318 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.33090 * 125.51282 * 0.03190 * 9 7 2 11 11 C 1.32535 * 108.99103 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 126.19954 * 179.97438 * 11 10 9 13 13 C 1.38986 * 107.60666 * 0.26211 * 11 10 9 14 14 C 1.47092 * 126.59296 * 179.73779 * 13 11 10 15 15 C 1.40454 * 120.59646 * 46.77557 * 14 13 11 16 16 C 1.38215 * 118.24734 * 180.02562 * 15 14 13 17 17 C 1.38469 * 119.35770 * 0.02562 * 16 15 14 18 18 N 1.31970 * 121.17159 * 0.02562 * 17 16 15 19 19 C 1.31618 * 121.92067 * 359.65301 * 18 17 16 20 20 O 1.34970 * 125.50997 * 180.02562 * 9 7 2 21 21 H 0.97006 * 120.00250 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.87443 * 0.02562 * 15 14 13 23 23 H 1.08001 * 120.31751 * 180.02562 * 16 15 14 24 24 H 1.08000 * 119.40944 * 179.97438 * 17 16 15 25 25 H 1.08003 * 119.75012 * 180.31035 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2752 2.7465 -0.0006 6 1 3.0938 1.6965 1.2125 7 6 2.0080 -1.2155 0.0005 8 1 3.0881 -1.2154 0.0010 9 6 1.3115 -2.4220 0.0005 10 7 -0.0133 -2.5499 -0.0005 11 6 -0.3222 -3.8387 -0.0007 12 17 -1.9234 -4.5093 -0.0014 13 6 0.8681 -4.5563 0.0064 14 6 1.0093 -6.0204 0.0142 15 6 0.2563 -6.8159 -0.8650 16 6 0.4269 -8.1866 -0.8159 17 6 1.3249 -8.7269 0.0891 18 7 2.0194 -7.9566 0.9050 19 6 1.8996 -6.6459 0.8952 20 8 1.8710 -3.6503 0.0015 21 1 -0.4851 0.8401 -0.0004 22 1 -0.4377 -6.3683 -1.5610 23 1 -0.1347 -8.8299 -1.4771 24 1 1.4585 -9.7979 0.1284 25 1 2.4890 -6.0487 1.5751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259715349.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = 16.449419 kcal Electronic energy + Delta-G solvation = -15069.957284 eV Core-core repulsion = 12267.744545 eV Total energy + Delta-G solvation = -2802.212739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.12172 -40.74467 -37.66811 -36.08233 -34.56784 -33.90036 -32.66842 -30.59022 -27.50347 -24.55780 -24.28371 -22.94297 -22.02070 -19.64872 -18.27195 -17.77345 -17.32127 -16.98617 -16.57218 -16.14381 -15.10790 -14.99080 -14.70966 -14.22303 -14.05913 -13.54217 -13.38437 -13.03107 -13.00480 -12.86717 -12.08534 -12.00198 -11.66714 -11.05482 -10.92953 -10.72242 -10.45614 -10.13578 -9.18708 -8.75014 -6.83102 -0.13292 0.31054 0.92792 0.95022 1.40135 1.51648 1.57485 2.10976 2.17425 2.54028 2.93964 3.10341 3.55596 3.95692 4.00215 4.04631 4.28660 4.38542 4.63160 4.83996 4.94777 5.12018 5.25025 5.32900 5.59188 5.77772 5.91409 6.26547 6.47150 7.00452 7.56584 8.18616 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.006371 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.179329 B = 4394.126479 C = 5055.571030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.029 3.971 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.251 1.251 7 C -0.439 4.439 8 H 0.114 0.886 9 C 0.313 3.687 10 N -0.561 5.561 11 C 0.097 3.903 12 Cl -0.012 7.012 13 C -0.164 4.164 14 C -0.033 4.033 15 C -0.075 4.075 16 C -0.150 4.150 17 C 0.083 3.917 18 N -0.498 5.498 19 C 0.090 3.910 20 O -0.241 6.241 21 H 0.295 0.705 22 H 0.134 0.866 23 H 0.179 0.821 24 H 0.195 0.805 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -7.908 -1.841 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.834 3.166 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.175 1.175 7 C -0.472 4.472 8 H 0.132 0.868 9 C 0.135 3.865 10 N -0.293 5.293 11 C -0.059 4.059 12 Cl 0.017 6.983 13 C -0.221 4.221 14 C -0.036 4.036 15 C -0.101 4.101 16 C -0.169 4.169 17 C -0.074 4.074 18 N -0.206 5.206 19 C -0.067 4.067 20 O -0.140 6.140 21 H 0.106 0.894 22 H 0.152 0.848 23 H 0.196 0.804 24 H 0.212 0.788 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.049 -7.687 -1.249 7.788 hybrid contribution -0.297 0.633 -0.488 0.853 sum -0.248 -7.053 -1.737 7.268 Atomic orbital electron populations 1.70046 1.09406 1.31331 1.26718 1.27165 0.95914 1.04631 0.91817 0.84738 0.78217 0.72892 0.80755 1.17509 1.18698 1.17522 1.18846 0.95992 0.86322 1.46065 0.86821 1.22439 0.86172 0.84093 0.93839 1.71002 1.12378 1.14477 1.31428 1.22765 0.86690 0.91477 1.04971 1.98251 1.20246 1.82723 1.97129 1.20651 0.84696 0.89417 1.27313 1.18625 0.99780 0.87011 0.98196 1.21866 0.97776 0.94592 0.95871 1.22404 0.99742 0.94103 1.00612 1.23495 0.91654 1.01452 0.90802 1.67624 1.24180 1.05193 1.23610 1.22895 0.96375 0.90915 0.96512 1.84590 1.35857 1.16615 1.76893 0.89384 0.84828 0.80413 0.78850 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.20 11.85 21.90 0.26 -38.94 15 2 C 0.03 1.38 5.50 85.39 0.47 1.85 15 3 Si 1.02 34.90 29.56 68.60 2.03 36.93 15 4 H -0.25 -8.21 7.11 99.48 0.71 -7.50 15 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 6 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 7 C -0.44 -23.08 9.43 23.05 0.22 -22.87 15 8 H 0.11 5.41 7.85 -2.91 -0.02 5.39 15 9 C 0.31 17.85 7.70 84.76 0.65 18.50 15 10 N -0.56 -32.40 9.35 -298.48 -2.79 -35.19 15 11 C 0.10 4.96 7.77 84.77 0.66 5.61 15 12 Cl -0.01 -0.48 28.17 -2.72 -0.08 -0.56 15 13 C -0.16 -8.05 6.88 24.77 0.17 -7.88 15 14 C -0.03 -1.33 5.75 -19.99 -0.11 -1.44 15 15 C -0.07 -2.41 9.23 22.80 0.21 -2.20 15 16 C -0.15 -3.52 10.09 22.32 0.23 -3.29 15 17 C 0.08 2.03 11.17 84.73 0.95 2.98 15 18 N -0.50 -16.12 10.34 -194.29 -2.01 -18.13 15 19 C 0.09 3.36 10.97 85.15 0.93 4.29 15 20 O -0.24 -13.08 10.84 -17.75 -0.19 -13.27 15 21 H 0.30 13.63 8.29 -92.70 -0.77 12.86 15 22 H 0.13 4.20 7.69 -2.91 -0.02 4.17 15 23 H 0.18 2.56 8.06 -2.91 -0.02 2.54 15 24 H 0.19 2.98 8.06 -2.91 -0.02 2.95 15 25 H 0.15 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -65.89 253.94 2.83 -63.06 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.24 Total: 10.54 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.37 Total: -4.45 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -4.54 Total: -92.25 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.19 Total: -13.27 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -65.89 2.83 -63.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259715349.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.513 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds