Wall clock time and date at job start Mon Mar 30 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34057 * 122.37025 * 2 1 4 4 S 1.75808 * 110.05540 * 180.02562 * 3 2 1 5 5 C 1.75883 * 91.09811 * 0.02562 * 4 3 2 6 6 C 1.41561 * 125.36917 * 179.97438 * 5 4 3 7 7 S 1.75673 * 125.25101 * 174.74930 * 6 5 4 8 8 C 1.75461 * 92.10360 * 179.73569 * 7 6 5 9 9 C 1.32487 * 111.43436 * 359.97438 * 8 7 6 10 10 C 1.39703 * 125.25053 * 354.44567 * 6 5 4 11 11 C 1.40512 * 123.75439 * 0.21313 * 10 6 5 12 12 H 1.08006 * 120.00034 * 330.92583 * 11 10 6 13 13 C 1.39636 * 119.99997 * 150.92228 * 11 10 6 14 14 N 1.31114 * 120.00158 * 351.07767 * 13 11 10 15 15 Si 1.86798 * 119.99904 * 171.07831 * 13 11 10 16 16 H 1.48498 * 109.47395 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47334 * 120.00112 * 15 13 11 18 18 H 1.48504 * 109.47129 * 240.00299 * 15 13 11 19 19 C 1.37161 * 109.26355 * 0.26512 * 5 4 3 20 20 H 1.08994 * 109.47193 * 89.97365 * 1 2 3 21 21 H 1.09001 * 109.47314 * 209.97605 * 1 2 3 22 22 H 1.08997 * 109.46896 * 329.97452 * 1 2 3 23 23 H 1.08007 * 124.97270 * 0.02562 * 3 2 1 24 24 H 1.07992 * 124.28070 * 180.02562 * 8 7 6 25 25 H 1.07998 * 122.75856 * 180.02562 * 9 8 7 26 26 H 0.96991 * 120.00287 * 180.02562 * 14 13 11 27 27 H 1.07999 * 122.84193 * 179.73443 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2247 1.1323 0.0000 4 16 3.9424 0.7573 -0.0007 5 6 3.6002 -0.9680 -0.0018 6 6 4.5731 -1.9963 -0.0033 7 16 4.2323 -3.7147 0.1269 8 6 5.9354 -4.1257 0.0295 9 6 6.6886 -3.0425 -0.0919 10 6 5.9521 -1.8015 -0.1146 11 6 6.5547 -0.5381 -0.2367 12 1 6.0177 0.2734 -0.7053 13 6 7.8480 -0.3316 0.2478 14 7 8.4333 -1.2570 0.9691 15 14 8.7440 1.2629 -0.1315 16 1 7.8723 2.1362 -0.9577 17 1 9.0796 1.9564 1.1381 18 1 9.9929 0.9636 -0.8771 19 6 2.2422 -1.1600 -0.0075 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3633 0.8897 0.5142 23 1 1.8087 2.1290 0.0004 24 1 6.3207 -5.1339 0.0634 25 1 7.7651 -3.0848 -0.1673 26 1 9.3315 -1.1135 1.3059 27 1 1.7893 -2.1404 -0.0135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259749301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:24 Heat of formation + Delta-G solvation = 33.013991 kcal Electronic energy + Delta-G solvation = -13327.309001 eV Core-core repulsion = 11074.151477 eV Total energy + Delta-G solvation = -2253.157524 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.22610 -36.38792 -33.22801 -31.24104 -28.60782 -26.84399 -25.36422 -22.53836 -20.76691 -19.37538 -17.70970 -17.31033 -15.79285 -15.44471 -14.93758 -13.83234 -13.60211 -13.28010 -12.65701 -12.45710 -12.31560 -11.95645 -11.69295 -11.50074 -11.46970 -11.14163 -10.89393 -10.70144 -10.53089 -10.36934 -9.70668 -9.42429 -9.23876 -8.50960 -7.37525 -7.25976 -7.22274 -6.64088 -4.59828 1.54268 2.52050 2.72646 2.85744 2.89223 2.97027 3.13940 3.21039 3.61988 3.66346 3.86346 4.02113 4.97037 5.71565 5.83416 5.96450 6.06150 6.14981 6.29409 6.54220 6.65244 6.73316 6.87775 7.07321 7.14053 7.30329 7.49263 7.61924 7.71554 8.02414 8.32013 8.39997 9.72831 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010165 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.319202 B = 2753.941210 C = 4070.257103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.066 4.066 3 C -0.331 4.331 4 S 0.113 5.887 5 C 0.015 3.985 6 C -0.308 4.308 7 S -0.009 6.009 8 C -0.214 4.214 9 C -0.097 4.097 10 C 0.114 3.886 11 C -0.394 4.394 12 H 0.100 0.900 13 C 0.073 3.927 14 N -0.774 5.774 15 Si 0.916 3.084 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.260 4.260 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.290 0.710 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 1.351 -1.253 3.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.465 4.465 4 S 0.379 5.621 5 C -0.105 4.105 6 C -0.427 4.427 7 S 0.247 5.753 8 C -0.349 4.349 9 C -0.129 4.129 10 C 0.102 3.898 11 C -0.428 4.428 12 H 0.117 0.883 13 C -0.149 4.149 14 N -0.397 5.397 15 Si 0.739 3.261 16 H -0.174 1.174 17 H -0.191 1.191 18 H -0.192 1.192 19 C -0.287 4.287 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.156 0.844 24 H 0.157 0.843 25 H 0.157 0.843 26 H 0.101 0.899 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.375 1.374 -0.965 2.909 hybrid contribution 0.499 0.469 -0.123 0.695 sum -1.876 1.842 -1.088 2.846 Atomic orbital electron populations 1.20443 0.91941 1.01357 1.01084 1.18373 0.95579 0.92426 1.01372 1.25347 0.98638 1.00582 1.21926 1.84326 1.03168 1.00548 1.74056 1.21123 0.94605 0.94468 1.00265 1.20375 0.94695 0.92619 1.34977 1.83074 1.06620 1.02692 1.82927 1.24970 0.96719 1.01494 1.11703 1.21403 1.00527 0.91137 0.99823 1.18191 0.89009 0.93436 0.89210 1.19468 0.97864 0.96196 1.29250 0.88314 1.26083 0.96928 0.99355 0.92545 1.69857 1.14267 1.33518 1.22063 0.86064 0.79581 0.80570 0.79873 1.17409 1.19131 1.19152 1.19914 0.91569 0.97869 1.19325 0.92268 0.92414 0.92653 0.84402 0.84255 0.84312 0.89896 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.12 36.01 0.36 -1.03 15 2 C -0.07 -1.32 5.78 -106.42 -0.62 -1.93 15 3 C -0.33 -6.61 10.97 29.26 0.32 -6.29 15 4 S 0.11 2.49 19.55 -107.50 -2.10 0.39 15 5 C 0.02 0.37 6.24 -38.71 -0.24 0.12 15 6 C -0.31 -7.67 6.32 -37.77 -0.24 -7.91 15 7 S -0.01 -0.21 22.65 -107.50 -2.43 -2.64 15 8 C -0.21 -4.58 11.05 28.82 0.32 -4.27 15 9 C -0.10 -2.27 9.00 -39.10 -0.35 -2.62 15 10 C 0.11 2.87 5.61 -106.10 -0.60 2.27 15 11 C -0.39 -9.64 7.97 -38.20 -0.30 -9.94 15 12 H 0.10 2.38 5.19 -40.82 -0.21 2.17 15 13 C 0.07 1.65 5.38 -17.34 -0.09 1.56 15 14 N -0.77 -17.83 11.12 55.53 0.62 -17.21 15 15 Si 0.92 17.06 29.57 -169.99 -5.03 12.03 15 16 H -0.25 -4.67 7.11 56.52 0.40 -4.27 15 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 18 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 19 C -0.26 -5.80 9.66 -40.30 -0.39 -6.19 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.06 0.85 8.13 -51.93 -0.42 0.42 15 22 H 0.05 0.77 8.12 -51.93 -0.42 0.35 15 23 H 0.14 2.40 8.06 -52.48 -0.42 1.98 15 24 H 0.14 2.51 8.06 -52.49 -0.42 2.09 15 25 H 0.14 3.21 6.77 -52.49 -0.36 2.85 15 26 H 0.29 5.97 8.30 -40.82 -0.34 5.64 15 27 H 0.12 2.55 7.83 -52.49 -0.41 2.14 15 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -25.76 260.88 -9.06 -34.82 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.22 Total: 4.89 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: -1.83 Total: -36.21 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.62 Total: -17.21 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -4.54 Total: -2.25 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.76 -9.06 -34.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.833 kcal (2) G-P(sol) polarization free energy of solvation -25.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds