Wall clock time and date at job start Mon Mar 30 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 120.00443 * 2 1 4 4 H 1.48503 * 109.46790 * 90.00009 * 3 2 1 5 5 H 1.48491 * 109.47280 * 210.00100 * 3 2 1 6 6 H 1.48494 * 109.47116 * 330.00600 * 3 2 1 7 7 C 1.39914 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00442 * 17.72716 * 7 2 1 9 9 C 1.41119 * 119.99685 * 197.73015 * 7 2 1 10 10 C 1.40768 * 120.25793 * 28.76387 * 9 7 2 11 11 C 1.37593 * 119.82372 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.82598 * 180.02562 * 11 10 9 13 13 C 1.39215 * 120.34920 * 359.97438 * 11 10 9 14 14 Cl 1.73591 * 119.73821 * 179.97438 * 13 11 10 15 15 C 1.38494 * 120.52165 * 0.02562 * 13 11 10 16 16 Cl 1.73601 * 119.91436 * 179.97438 * 15 13 11 17 17 C 1.38441 * 120.17226 * 359.69397 * 15 13 11 18 18 O 1.35704 * 120.18033 * 180.27959 * 17 15 13 19 19 H 0.97000 * 120.00586 * 175.44085 * 1 2 3 20 20 H 1.07998 * 120.08983 * 359.95464 * 10 9 7 21 21 H 0.96694 * 114.00435 * 270.27581 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 1.4001 5 1 3.5404 1.4400 -0.7000 6 1 1.4404 2.6526 -0.6999 7 6 2.0083 -1.2117 -0.0005 8 1 1.5067 -2.1247 -0.2857 9 6 3.3692 -1.2409 0.3716 10 6 3.8770 -0.2918 1.2787 11 6 5.2053 -0.3289 1.6358 12 9 5.6926 0.5817 2.5068 13 6 6.0495 -1.3004 1.1052 14 17 7.7228 -1.3321 1.5662 15 6 5.5651 -2.2412 0.2117 16 17 6.6320 -3.4452 -0.4408 17 6 4.2311 -2.2274 -0.1581 18 8 3.7550 -3.1526 -1.0292 19 1 -0.4851 -0.8373 -0.0668 20 1 3.2259 0.4637 1.6930 21 1 3.8135 -2.8862 -1.9569 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259754469.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:06 Heat of formation + Delta-G solvation = -97.812363 kcal Electronic energy + Delta-G solvation = -13953.205422 eV Core-core repulsion = 10987.852015 eV Total energy + Delta-G solvation = -2965.353407 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 249.970 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.24003 -38.72753 -36.15247 -35.86449 -35.32468 -33.95699 -30.50163 -28.56622 -25.28244 -22.36145 -21.09493 -18.79461 -17.70496 -16.61447 -16.30012 -15.24320 -14.80873 -14.37484 -14.05895 -13.62510 -13.32230 -13.12455 -12.45647 -12.07774 -11.59566 -11.19555 -11.14827 -10.73046 -10.45508 -10.22516 -10.13143 -9.92601 -9.86362 -9.26693 -8.10797 -7.84666 -7.64338 -5.04622 1.82355 1.87806 2.56102 2.95893 3.00595 3.09798 3.28612 3.68783 3.85692 4.70204 5.00722 5.15897 5.76587 6.01591 6.36682 6.51245 6.63933 7.02460 7.07523 7.24518 7.69153 7.91957 8.16055 8.50944 9.52838 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.010545 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.144075 B = 2654.745127 C = 3535.264031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.040 3.960 3 Si 1.066 2.934 4 H -0.269 1.269 5 H -0.258 1.258 6 H -0.280 1.280 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.098 3.902 10 C -0.270 4.270 11 C 0.164 3.836 12 F -0.141 7.141 13 C -0.195 4.195 14 Cl -0.082 7.082 15 C 0.023 3.977 16 Cl -0.072 7.072 17 C 0.004 3.996 18 O -0.475 6.475 19 H 0.295 0.705 20 H 0.134 0.866 21 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 -0.131 -1.247 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.184 4.184 3 Si 0.890 3.110 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.488 4.488 8 H 0.114 0.886 9 C 0.093 3.907 10 C -0.290 4.290 11 C 0.143 3.857 12 F -0.120 7.120 13 C -0.224 4.224 14 Cl -0.054 7.054 15 C -0.005 4.005 16 Cl -0.043 7.043 17 C -0.043 4.043 18 O -0.282 6.282 19 H 0.107 0.893 20 H 0.151 0.849 21 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.903 1.041 -0.684 6.033 hybrid contribution 0.468 -1.515 -0.278 1.610 sum 6.371 -0.474 -0.961 6.461 Atomic orbital electron populations 1.70540 1.08040 1.33914 1.27451 1.27554 0.95678 1.04796 0.90405 0.83668 0.75830 0.72821 0.78704 1.19535 1.18255 1.20689 1.20788 0.93893 0.97499 1.36662 0.88627 1.17647 0.93541 0.89170 0.90293 1.20982 0.93397 1.07890 1.06765 1.16916 0.91310 0.87302 0.90137 1.91431 1.88581 1.64921 1.67053 1.19600 0.85796 1.04889 1.12120 1.98264 1.16420 1.98532 1.92142 1.20611 0.90028 0.91810 0.98083 1.98304 1.65482 1.55408 1.85143 1.17916 0.87958 0.97836 1.00568 1.84802 1.84299 1.40898 1.18228 0.89338 0.84905 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 13.66 55.55 0.76 -17.77 14 2 C 0.04 0.92 5.42 -17.33 -0.09 0.82 14 3 Si 1.07 21.59 24.90 -169.99 -4.23 17.36 14 4 H -0.27 -5.26 6.43 56.52 0.36 -4.90 14 5 H -0.26 -5.18 7.03 56.52 0.40 -4.78 14 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.46 -10.99 9.06 -37.86 -0.34 -11.33 14 8 H 0.10 2.37 7.87 -52.49 -0.41 1.96 14 9 C 0.10 2.28 5.15 -106.69 -0.55 1.73 14 10 C -0.27 -6.08 7.24 -38.86 -0.28 -6.36 14 11 C 0.16 3.57 7.26 -39.45 -0.29 3.28 14 12 F -0.14 -2.94 16.81 2.25 0.04 -2.90 14 13 C -0.20 -4.14 6.35 -39.12 -0.25 -4.39 14 14 Cl -0.08 -1.54 27.56 -51.86 -1.43 -2.97 14 15 C 0.02 0.48 6.33 -39.41 -0.25 0.23 14 16 Cl -0.07 -1.33 27.46 -51.86 -1.42 -2.75 14 17 C 0.00 0.09 6.73 -38.34 -0.26 -0.16 14 18 O -0.47 -9.55 12.28 -18.82 -0.23 -9.78 14 19 H 0.29 6.77 8.73 -40.82 -0.36 6.41 14 20 H 0.13 2.92 4.39 -52.49 -0.23 2.69 14 21 H 0.37 5.88 9.06 45.56 0.41 6.29 14 LS Contribution 226.81 15.07 3.42 3.42 Total: -1.00 -24.17 226.81 -4.84 -29.00 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.58 Total: 2.57 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.31 Total: -16.17 kcal Atomic # 7 Polarization: -18.53 SS G_CDS: 0.76 Total: -17.77 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.23 Total: -9.78 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.23 Total: 17.36 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -2.85 Total: -5.72 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -24.17 -4.84 -29.00 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754469.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.809 kcal (2) G-P(sol) polarization free energy of solvation -24.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds