Wall clock time and date at job start Mon Mar 30 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 120.00443 * 2 1 4 4 H 1.48503 * 109.46790 * 90.00009 * 3 2 1 5 5 H 1.48491 * 109.47280 * 210.00100 * 3 2 1 6 6 H 1.48494 * 109.47116 * 330.00600 * 3 2 1 7 7 C 1.39914 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00442 * 17.72716 * 7 2 1 9 9 C 1.41119 * 119.99685 * 197.73015 * 7 2 1 10 10 C 1.40768 * 120.25793 * 28.76387 * 9 7 2 11 11 C 1.37593 * 119.82372 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.82598 * 180.02562 * 11 10 9 13 13 C 1.39215 * 120.34920 * 359.97438 * 11 10 9 14 14 Cl 1.73591 * 119.73821 * 179.97438 * 13 11 10 15 15 C 1.38494 * 120.52165 * 0.02562 * 13 11 10 16 16 Cl 1.73601 * 119.91436 * 179.97438 * 15 13 11 17 17 C 1.38441 * 120.17226 * 359.69397 * 15 13 11 18 18 O 1.35704 * 120.18033 * 180.27959 * 17 15 13 19 19 H 0.97000 * 120.00586 * 175.44085 * 1 2 3 20 20 H 1.07998 * 120.08983 * 359.95464 * 10 9 7 21 21 H 0.96694 * 114.00435 * 270.27581 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 1.4001 5 1 3.5404 1.4400 -0.7000 6 1 1.4404 2.6526 -0.6999 7 6 2.0083 -1.2117 -0.0005 8 1 1.5067 -2.1247 -0.2857 9 6 3.3692 -1.2409 0.3716 10 6 3.8770 -0.2918 1.2787 11 6 5.2053 -0.3289 1.6358 12 9 5.6926 0.5817 2.5068 13 6 6.0495 -1.3004 1.1052 14 17 7.7228 -1.3321 1.5662 15 6 5.5651 -2.2412 0.2117 16 17 6.6320 -3.4452 -0.4408 17 6 4.2311 -2.2274 -0.1581 18 8 3.7550 -3.1526 -1.0292 19 1 -0.4851 -0.8373 -0.0668 20 1 3.2259 0.4637 1.6930 21 1 3.8135 -2.8862 -1.9569 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259754469.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:05 Heat of formation + Delta-G solvation = -112.321505 kcal Electronic energy + Delta-G solvation = -13953.834585 eV Core-core repulsion = 10987.852015 eV Total energy + Delta-G solvation = -2965.982571 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 249.970 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.91703 -40.41931 -37.76290 -37.46313 -36.96783 -35.68270 -32.22994 -30.27268 -27.03048 -24.07176 -22.81270 -20.54359 -19.35273 -18.30191 -18.00337 -16.91879 -16.47361 -16.00803 -15.70792 -15.37883 -14.96573 -14.81628 -14.08119 -13.72452 -13.28177 -12.85224 -12.68800 -12.33340 -12.05889 -11.81279 -11.78025 -11.60355 -11.49584 -10.93549 -9.83075 -9.55655 -9.38281 -6.84457 0.11410 0.14918 0.94067 1.33555 1.35008 1.47575 1.71029 2.05400 2.16133 2.95264 3.31556 3.50049 4.04275 4.29209 4.65734 4.85707 4.90185 5.25541 5.30298 5.51380 5.96490 6.09346 6.42345 6.98010 7.75675 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.010545 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.144075 B = 2654.745127 C = 3535.264031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.020 3.980 3 Si 1.087 2.913 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.074 0.926 9 C 0.088 3.912 10 C -0.276 4.276 11 C 0.158 3.842 12 F -0.135 7.135 13 C -0.191 4.191 14 Cl -0.059 7.059 15 C 0.015 3.985 16 Cl -0.046 7.046 17 C 0.004 3.996 18 O -0.481 6.481 19 H 0.290 0.710 20 H 0.137 0.863 21 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 0.074 -1.208 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.200 4.200 3 Si 0.907 3.093 4 H -0.183 1.183 5 H -0.180 1.180 6 H -0.196 1.196 7 C -0.512 4.512 8 H 0.092 0.908 9 C 0.084 3.916 10 C -0.296 4.296 11 C 0.137 3.863 12 F -0.114 7.114 13 C -0.220 4.220 14 Cl -0.030 7.030 15 C -0.014 4.014 16 Cl -0.017 7.017 17 C -0.043 4.043 18 O -0.291 6.291 19 H 0.102 0.898 20 H 0.154 0.846 21 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 7.536 1.234 -0.654 7.665 hybrid contribution 0.155 -1.708 -0.297 1.741 sum 7.692 -0.475 -0.951 7.765 Atomic orbital electron populations 1.70587 1.08500 1.33675 1.29573 1.28323 0.95709 1.06493 0.89492 0.83419 0.75357 0.71019 0.79484 1.18322 1.17951 1.19627 1.20647 0.94534 0.97112 1.38924 0.90786 1.17797 0.93495 0.89886 0.90431 1.21065 0.93908 1.07901 1.06690 1.16944 0.91250 0.87683 0.90409 1.91445 1.88428 1.64698 1.66787 1.19807 0.87000 1.04131 1.11097 1.98275 1.14417 1.98446 1.91888 1.20661 0.90276 0.92383 0.98033 1.98311 1.64448 1.54255 1.84714 1.18013 0.88249 0.97342 1.00678 1.84731 1.84280 1.40631 1.19476 0.89840 0.84610 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.67 13.66 21.82 0.30 -38.37 14 2 C 0.02 0.91 5.42 85.24 0.46 1.37 14 3 Si 1.09 42.48 24.90 68.60 1.71 44.19 14 4 H -0.26 -9.53 6.43 99.48 0.64 -8.89 14 5 H -0.26 -9.78 7.03 99.48 0.70 -9.08 14 6 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 7 C -0.49 -23.30 9.06 23.38 0.21 -23.09 14 8 H 0.07 3.78 7.87 -2.91 -0.02 3.76 14 9 C 0.09 4.03 5.15 -21.20 -0.11 3.92 14 10 C -0.28 -12.03 7.24 22.74 0.16 -11.86 14 11 C 0.16 6.54 7.26 22.35 0.16 6.71 14 12 F -0.14 -5.30 16.81 44.97 0.76 -4.54 14 13 C -0.19 -7.64 6.35 22.57 0.14 -7.50 14 14 Cl -0.06 -2.04 27.56 -2.72 -0.07 -2.12 14 15 C 0.01 0.59 6.33 22.38 0.14 0.73 14 16 Cl -0.05 -1.58 27.46 -2.72 -0.07 -1.65 14 17 C 0.00 0.19 6.73 23.07 0.16 0.34 14 18 O -0.48 -18.74 12.28 -90.24 -1.11 -19.85 14 19 H 0.29 13.73 8.73 -92.71 -0.81 12.92 14 20 H 0.14 5.79 4.39 -2.91 -0.01 5.77 14 21 H 0.39 11.81 9.06 -74.06 -0.67 11.13 14 Total: -1.00 -48.84 226.81 3.37 -45.47 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.53 Total: 6.25 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 1.33 Total: -29.38 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.30 Total: -38.37 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.11 Total: -19.85 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.76 Total: -4.54 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.71 Total: 44.19 kcal Atomic # 17 Polarization: -3.62 SS G_CDS: -0.15 Total: -3.77 kcal Total: -48.84 3.37 -45.47 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754469.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.850 kcal (2) G-P(sol) polarization free energy of solvation -48.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds