Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86794 * 120.00352 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47396 * 299.99817 * 3 2 1 6 6 H 1.48505 * 109.47128 * 60.00112 * 3 2 1 7 7 C 1.40271 * 119.99477 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.40181 * 120.00124 * 359.97438 * 7 2 1 10 10 N 1.33457 * 128.00851 * 179.97438 * 9 7 2 11 11 C 1.31293 * 113.40566 * 179.97438 * 10 9 7 12 12 C 1.48290 * 120.67003 * 180.02562 * 11 10 9 13 13 C 1.39417 * 120.10139 * 179.97438 * 12 11 10 14 14 C 1.37943 * 119.90243 * 180.02562 * 13 12 11 15 15 C 1.38582 * 120.09660 * 0.28036 * 14 13 12 16 16 F 1.35102 * 119.89714 * 179.72010 * 15 14 13 17 17 C 1.38579 * 120.20056 * 359.44554 * 15 14 13 18 18 C 1.37944 * 120.09737 * 0.54921 * 17 15 14 19 19 N 1.31096 * 118.66340 * 0.27504 * 11 10 9 20 20 S 1.56686 * 108.57078 * 359.57743 * 19 11 10 21 21 H 0.97003 * 119.99580 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.04865 * 359.97438 * 13 12 11 23 23 H 1.08002 * 119.94861 * 179.97438 * 14 13 12 24 24 H 1.07997 * 119.95316 * 180.27607 * 17 15 14 25 25 H 1.08001 * 120.04817 * 179.74537 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7005 1.3462 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0877 -1.2149 -0.0001 9 6 1.3067 -2.4288 -0.0005 10 7 1.8064 -3.6663 -0.0015 11 6 0.8844 -4.6010 -0.0006 12 6 1.2613 -6.0352 -0.0009 13 6 0.2724 -7.0180 0.0005 14 6 0.6277 -8.3510 0.0008 15 6 1.9651 -8.7137 0.0055 16 9 2.3085 -10.0204 0.0115 17 6 2.9515 -7.7403 -0.0016 18 6 2.6055 -6.4049 -0.0020 19 7 -0.3761 -4.2409 -0.0046 20 16 -0.4480 -2.6757 0.0014 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7701 -6.7362 0.0022 23 1 -0.1378 -9.1129 0.0023 24 1 3.9925 -8.0275 -0.0024 25 1 3.3748 -5.6470 -0.0034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -15.585038 kcal Electronic energy + Delta-G solvation = -14666.636991 eV Core-core repulsion = 11877.451630 eV Total energy + Delta-G solvation = -2789.185361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.90238 -40.79151 -39.12645 -36.26090 -33.02120 -32.14389 -31.36089 -29.42241 -25.51732 -23.95487 -23.04663 -20.99523 -19.71935 -18.64315 -18.56533 -17.07915 -16.89289 -16.80938 -16.59371 -15.66806 -15.38965 -14.89674 -14.48628 -14.14417 -13.76448 -13.52758 -13.39335 -13.25784 -13.01935 -12.10711 -11.95473 -11.80515 -11.65906 -11.20427 -10.85822 -10.17736 -10.10636 -10.10528 -9.04969 -8.95060 -7.00809 -0.20013 0.27717 0.63752 1.35053 1.42287 1.52755 1.63962 1.96171 2.07560 2.16003 2.72034 3.10946 3.21729 3.56486 3.82393 3.94555 4.33785 4.36824 4.74601 4.83877 4.96880 5.04718 5.10151 5.35064 5.40780 5.63927 5.84679 5.88727 6.20301 6.27387 7.50227 7.90491 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.052751 B = 0.005158 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.668914 B = 5427.088028 C = 5947.906780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.020 3.980 3 Si 1.025 2.975 4 H -0.249 1.249 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.354 4.354 8 H 0.116 0.884 9 C 0.130 3.870 10 N -0.621 5.621 11 C 0.279 3.721 12 C -0.036 4.036 13 C -0.067 4.067 14 C -0.149 4.149 15 C 0.096 3.904 16 F -0.138 7.138 17 C -0.147 4.147 18 C -0.062 4.062 19 N -0.687 5.687 20 S 0.218 5.782 21 H 0.318 0.682 22 H 0.130 0.870 23 H 0.164 0.836 24 H 0.166 0.834 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -3.749 0.017 5.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.204 4.204 3 Si 0.841 3.159 4 H -0.172 1.172 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.400 4.400 8 H 0.134 0.866 9 C -0.123 4.123 10 N -0.357 5.357 11 C -0.007 4.007 12 C -0.041 4.041 13 C -0.088 4.088 14 C -0.167 4.167 15 C 0.076 3.924 16 F -0.116 7.116 17 C -0.166 4.166 18 C -0.082 4.082 19 N -0.529 5.529 20 S 0.369 5.631 21 H 0.131 0.869 22 H 0.148 0.852 23 H 0.181 0.819 24 H 0.183 0.817 25 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.050 -3.807 0.016 4.323 hybrid contribution 0.822 0.090 -0.001 0.827 sum 2.872 -3.717 0.015 4.697 Atomic orbital electron populations 1.69072 1.09498 1.33737 1.28194 1.27417 0.96021 1.05872 0.91075 0.84483 0.79001 0.72632 0.79736 1.17197 1.17991 1.17999 1.19533 0.96574 0.87348 1.36528 0.86634 1.26369 0.95364 0.94722 0.95812 1.69170 1.31341 0.98391 1.36784 1.21708 0.84352 0.95922 0.98734 1.18367 0.94648 0.88159 1.02972 1.21090 0.99623 0.91426 0.96685 1.21201 0.95316 0.96470 1.03725 1.17830 0.93608 0.77934 1.03074 1.91485 1.93014 1.33183 1.93951 1.21247 1.00801 0.91037 1.03496 1.21166 0.94974 0.96131 0.95971 1.73187 1.23295 1.15929 1.40481 1.82433 1.12907 0.95957 1.71843 0.86869 0.85179 0.81882 0.81669 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -34.61 10.98 21.88 0.24 -34.37 15 2 C 0.02 0.86 5.50 85.36 0.47 1.33 15 3 Si 1.03 30.84 29.56 68.60 2.03 32.86 15 4 H -0.25 -7.30 7.11 99.48 0.71 -6.59 15 5 H -0.26 -7.29 7.11 99.48 0.71 -6.59 15 6 H -0.26 -7.30 7.11 99.48 0.71 -6.59 15 7 C -0.35 -17.23 9.46 23.24 0.22 -17.01 15 8 H 0.12 5.29 7.85 -2.91 -0.02 5.27 15 9 C 0.13 7.07 7.44 84.92 0.63 7.70 15 10 N -0.62 -33.81 10.09 -221.25 -2.23 -36.04 15 11 C 0.28 14.62 7.35 138.37 1.02 15.64 15 12 C -0.04 -1.57 5.88 -20.04 -0.12 -1.68 15 13 C -0.07 -2.49 9.59 22.48 0.22 -2.27 15 14 C -0.15 -4.34 10.01 22.28 0.22 -4.11 15 15 C 0.10 2.73 7.30 22.43 0.16 2.90 15 16 F -0.14 -3.63 17.26 44.97 0.78 -2.86 15 17 C -0.15 -4.25 10.01 22.28 0.22 -4.03 15 18 C -0.06 -2.25 9.59 22.48 0.22 -2.03 15 19 N -0.69 -37.14 10.62 -83.54 -0.89 -38.03 15 20 S 0.22 11.69 20.89 -56.49 -1.18 10.51 15 21 H 0.32 12.14 8.29 -92.71 -0.77 11.37 15 22 H 0.13 4.98 7.59 -2.91 -0.02 4.96 15 23 H 0.16 3.68 8.06 -2.91 -0.02 3.66 15 24 H 0.17 3.65 8.06 -2.91 -0.02 3.63 15 25 H 0.14 5.13 7.59 -2.91 -0.02 5.11 15 Total: -1.00 -60.51 250.28 3.25 -57.27 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.24 Total: 14.23 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 3.26 Total: -3.57 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -2.88 Total: -108.44 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 30.84 SS G_CDS: 2.03 Total: 32.86 kcal Atomic # 16 Polarization: 11.69 SS G_CDS: -1.18 Total: 10.51 kcal Total: -60.51 3.25 -57.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds