Wall clock time and date at job start Mon Mar 30 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47092 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47270 * 120.00481 * 3 2 1 6 6 H 1.48500 * 109.47066 * 240.00275 * 3 2 1 7 7 C 1.39929 * 120.00156 * 179.72984 * 2 1 3 8 8 H 1.07993 * 119.99676 * 144.80786 * 7 2 1 9 9 C 1.41115 * 119.99380 * 324.80826 * 7 2 1 10 10 C 1.41306 * 120.27343 * 134.72820 * 9 7 2 11 11 O 1.35704 * 120.18098 * 359.97438 * 10 9 7 12 12 C 1.38412 * 119.64114 * 179.97438 * 10 9 7 13 13 Cl 1.73600 * 119.89287 * 179.97438 * 12 10 9 14 14 C 1.38459 * 120.21511 * 0.02562 * 12 10 9 15 15 C 1.38935 * 120.56920 * 0.02562 * 14 12 10 16 16 F 1.35096 * 119.82084 * 180.02562 * 15 14 12 17 17 C 1.37845 * 120.35152 * 359.66516 * 15 14 12 18 18 Cl 1.73593 * 120.11152 * 180.30247 * 17 15 14 19 19 H 0.97002 * 120.00363 * 174.49843 * 1 2 3 20 20 H 0.96698 * 114.00640 * 89.99679 * 11 10 9 21 21 H 1.08000 * 119.71682 * 179.97438 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7464 0.0006 5 1 3.0966 1.6964 1.2124 6 1 3.0964 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0057 8 1 2.9403 -1.2997 -0.5329 9 6 1.4962 -2.3188 0.7153 10 6 1.4807 -3.6007 0.1209 11 8 1.9582 -3.7751 -1.1373 12 6 0.9757 -4.6775 0.8290 13 17 0.9529 -6.2551 0.1049 14 6 0.4878 -4.5003 2.1126 15 6 0.4978 -3.2436 2.7051 16 9 0.0184 -3.0881 3.9585 17 6 1.0011 -2.1562 2.0237 18 17 1.0178 -0.5904 2.7729 19 1 -0.4851 -0.8362 -0.0805 20 1 2.9009 -3.9873 -1.1744 21 1 0.0953 -5.3460 2.6576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829971.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:54 Heat of formation + Delta-G solvation = -110.368878 kcal Electronic energy + Delta-G solvation = -14059.753416 eV Core-core repulsion = 11093.855518 eV Total energy + Delta-G solvation = -2965.897898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 249.970 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.88977 -40.32636 -37.70726 -37.43640 -36.54977 -35.68989 -31.62541 -30.01758 -27.19533 -23.62980 -23.14611 -20.23654 -19.18344 -18.10442 -17.85012 -16.79545 -16.39046 -15.85168 -15.78575 -15.11957 -14.89457 -14.37005 -14.22613 -13.47878 -13.22898 -13.04328 -12.78770 -12.14088 -12.05924 -11.97624 -11.55933 -11.50037 -11.30333 -10.61253 -9.70052 -9.28259 -9.22507 -6.62815 0.12066 0.35948 1.09556 1.45205 1.52955 1.59750 1.75537 2.26266 2.35552 2.89807 3.40729 3.50482 4.10352 4.45367 4.84796 4.87165 5.04906 5.33438 5.56519 5.69833 5.91479 6.29507 6.63941 7.03439 7.93138 Molecular weight = 249.97amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.010645 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.245727 B = 2629.640554 C = 3504.706574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.037 3.963 3 Si 1.080 2.920 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.081 3.919 10 C 0.012 3.988 11 O -0.479 6.479 12 C 0.001 3.999 13 Cl -0.058 7.058 14 C -0.248 4.248 15 C 0.134 3.866 16 F -0.141 7.141 17 C -0.171 4.171 18 Cl -0.071 7.071 19 H 0.280 0.720 20 H 0.385 0.615 21 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -3.778 1.160 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.185 4.185 3 Si 0.898 3.102 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.175 1.175 7 C -0.552 4.552 8 H 0.111 0.889 9 C 0.077 3.923 10 C -0.035 4.035 11 O -0.289 6.289 12 C -0.027 4.027 13 Cl -0.029 7.029 14 C -0.268 4.268 15 C 0.113 3.887 16 F -0.120 7.120 17 C -0.200 4.200 18 Cl -0.042 7.042 19 H 0.091 0.909 20 H 0.241 0.759 21 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.723 -2.035 1.076 3.565 hybrid contribution 0.319 -1.877 0.387 1.943 sum 3.042 -3.912 1.464 5.167 Atomic orbital electron populations 1.70589 1.09115 1.32888 1.26987 1.27880 0.95052 1.06349 0.89254 0.83490 0.75829 0.71193 0.79697 1.19727 1.18522 1.17465 1.20301 1.09240 0.95839 1.29813 0.88921 1.17618 0.91500 0.93532 0.89684 1.18458 1.08102 0.90903 0.86024 1.84739 1.29495 1.92169 1.22452 1.20904 1.03100 0.85716 0.92946 1.98301 1.97167 1.24172 1.83222 1.20173 1.14887 0.95871 0.95915 1.17140 0.98317 0.93328 0.79871 1.91421 1.85928 1.96432 1.38211 1.21097 1.17776 0.85773 0.95377 1.98241 1.97465 1.27303 1.81202 0.90904 0.75932 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.40 12.69 21.83 0.28 -39.12 14 2 C 0.04 1.75 3.18 85.25 0.27 2.02 14 3 Si 1.08 41.12 29.82 68.60 2.05 43.16 14 4 H -0.27 -10.39 7.11 99.48 0.71 -9.68 14 5 H -0.26 -9.56 7.11 99.48 0.71 -8.86 14 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 14 7 C -0.53 -25.30 8.03 23.39 0.19 -25.11 14 8 H 0.09 4.30 8.04 -2.91 -0.02 4.28 14 9 C 0.08 3.88 4.81 -21.18 -0.10 3.78 14 10 C 0.01 0.53 6.73 23.07 0.16 0.69 14 11 O -0.48 -19.07 12.40 -90.25 -1.12 -20.19 14 12 C 0.00 0.04 6.32 22.36 0.14 0.18 14 13 Cl -0.06 -1.90 28.48 -2.72 -0.08 -1.98 14 14 C -0.25 -9.78 9.80 22.49 0.22 -9.56 14 15 C 0.13 5.83 7.26 22.34 0.16 5.99 14 16 F -0.14 -5.91 16.81 44.97 0.76 -5.15 14 17 C -0.17 -8.07 6.13 22.81 0.14 -7.93 14 18 Cl -0.07 -3.23 25.16 -2.72 -0.07 -3.30 14 19 H 0.28 14.96 8.13 -92.71 -0.75 14.20 14 20 H 0.39 11.78 9.06 -74.06 -0.67 11.11 14 21 H 0.15 5.14 8.06 -2.91 -0.02 5.12 14 Total: -1.00 -51.86 232.24 3.64 -48.22 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.65 Total: 8.29 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 1.18 Total: -29.94 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.28 Total: -39.12 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.12 Total: -20.19 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.76 Total: -5.15 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.05 Total: 43.16 kcal Atomic # 17 Polarization: -5.13 SS G_CDS: -0.15 Total: -5.28 kcal Total: -51.86 3.64 -48.22 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829971.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.150 kcal (2) G-P(sol) polarization free energy of solvation -51.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds