Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30654 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99926 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00032 * 3 2 1 7 7 C 1.40122 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99671 * 0.27875 * 7 2 1 10 10 N 1.33905 * 118.42766 * 359.72637 * 9 7 2 11 11 C 1.31506 * 122.14722 * 179.97438 * 10 9 7 12 12 Cl 1.73598 * 120.84676 * 180.02562 * 11 10 9 13 13 C 1.41164 * 118.29767 * 359.97438 * 11 10 9 14 14 C 1.39801 * 122.63053 * 180.02562 * 13 11 10 15 15 C 1.36393 * 119.56733 * 180.02562 * 14 13 11 16 16 C 1.39694 * 121.58852 * 359.95091 * 15 14 13 17 17 O 1.35786 * 119.29250 * 180.02562 * 16 15 14 18 18 C 1.37808 * 121.42188 * 0.05230 * 16 15 14 19 19 C 1.40328 * 119.20056 * 359.97265 * 18 16 15 20 20 N 1.33026 * 118.42582 * 179.45454 * 9 7 2 21 21 H 0.97005 * 120.00017 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.22343 * 359.95109 * 14 13 11 23 23 H 1.07997 * 119.20480 * 179.97438 * 15 14 13 24 24 H 0.96691 * 114.00174 * 270.02539 * 17 16 15 25 25 H 1.08002 * 120.40291 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0943 1.6965 1.2124 7 6 2.0072 -1.2135 0.0005 8 1 3.0872 -1.2134 0.0001 9 6 1.3006 -2.4373 -0.0049 10 7 -0.0379 -2.4006 -0.0048 11 6 -0.7679 -3.4944 -0.0101 12 17 -2.5017 -3.4074 -0.0105 13 6 -0.1056 -4.7410 -0.0167 14 6 -0.7916 -5.9591 -0.0232 15 6 -0.0882 -7.1276 -0.0287 16 6 1.3087 -7.1408 -0.0291 17 8 1.9618 -8.3313 -0.0353 18 6 2.0382 -5.9717 -0.0228 19 6 1.3614 -4.7424 -0.0164 20 7 1.9971 -3.5706 -0.0153 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8714 -5.9748 -0.0226 23 1 -0.6241 -8.0652 -0.0333 24 1 2.1508 -8.6807 0.8462 25 1 3.1179 -6.0011 -0.0236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259838018.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = 9.746321 kcal Electronic energy + Delta-G solvation = -15209.252614 eV Core-core repulsion = 12406.749207 eV Total energy + Delta-G solvation = -2802.503407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65799 -37.98612 -35.97770 -35.34973 -33.64418 -32.51360 -29.69019 -29.21355 -26.60955 -23.24692 -22.50628 -21.19801 -19.08983 -17.70699 -17.05187 -16.06110 -15.64082 -15.08025 -14.30721 -14.24372 -13.72639 -13.37521 -13.10962 -12.20818 -11.87268 -11.65224 -11.57894 -11.42942 -11.13787 -10.85533 -10.63409 -10.52376 -10.31678 -9.60438 -9.46129 -9.32497 -8.01622 -7.78175 -7.53152 -6.92967 -5.02444 1.23491 1.79029 2.57316 2.84949 2.88421 2.91739 3.00601 3.63646 3.72900 4.40060 4.65967 5.33135 5.53757 5.59096 5.68123 5.75368 6.02656 6.24269 6.26915 6.69589 6.81658 6.88899 7.07301 7.11519 7.31929 7.77321 7.99462 8.10562 8.17261 8.63430 9.71704 9.84922 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.007617 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.005074 B = 3674.975392 C = 4706.600174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.056 3.944 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.356 4.356 8 H 0.105 0.895 9 C 0.392 3.608 10 N -0.470 5.470 11 C 0.267 3.733 12 Cl -0.060 7.060 13 C -0.265 4.265 14 C -0.015 4.015 15 C -0.233 4.233 16 C 0.152 3.848 17 O -0.506 6.506 18 C -0.184 4.184 19 C 0.241 3.759 20 N -0.608 5.608 21 H 0.285 0.715 22 H 0.120 0.880 23 H 0.114 0.886 24 H 0.385 0.615 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -4.475 1.632 5.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.388 4.388 8 H 0.123 0.877 9 C 0.161 3.839 10 N -0.185 5.185 11 C 0.072 3.928 12 Cl -0.032 7.032 13 C -0.275 4.275 14 C -0.036 4.036 15 C -0.253 4.253 16 C 0.104 3.896 17 O -0.316 6.316 18 C -0.205 4.205 19 C 0.101 3.899 20 N -0.331 5.331 21 H 0.097 0.903 22 H 0.138 0.862 23 H 0.132 0.868 24 H 0.240 0.760 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.435 -3.173 1.017 3.628 hybrid contribution -0.488 -0.168 0.483 0.707 sum -1.924 -3.341 1.499 4.137 Atomic orbital electron populations 1.70085 1.07567 1.29577 1.23474 1.26347 0.95275 1.02192 0.93646 0.86012 0.79909 0.78441 0.80559 1.18291 1.19694 1.18287 1.19723 0.95506 0.87428 1.36185 0.87658 1.19729 0.83036 0.91849 0.89254 1.68211 1.08156 1.28105 1.14072 1.22127 0.86269 0.89941 0.94464 1.98322 1.09928 1.98565 1.96356 1.19764 0.95066 0.92986 1.19644 1.20525 0.98791 0.91034 0.93266 1.20523 0.92992 0.98018 1.13760 1.18296 0.89879 0.84025 0.97362 1.84733 1.78318 1.35378 1.33193 1.20750 0.99570 0.89581 1.10647 1.19623 0.87458 0.92910 0.89923 1.69208 1.37179 0.96684 1.30071 0.90305 0.86171 0.86761 0.75999 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.72 11.35 55.55 0.63 -16.09 15 2 C 0.06 1.29 5.50 -17.35 -0.10 1.20 15 3 Si 0.93 16.95 29.56 -169.99 -5.02 11.93 15 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 7 C -0.36 -9.08 9.34 -37.70 -0.35 -9.44 15 8 H 0.11 2.54 7.85 -52.49 -0.41 2.13 15 9 C 0.39 10.68 7.34 -158.39 -1.16 9.51 15 10 N -0.47 -12.49 7.66 -9.44 -0.07 -12.56 15 11 C 0.27 6.37 7.42 -16.58 -0.12 6.25 15 12 Cl -0.06 -1.18 27.96 -51.86 -1.45 -2.63 15 13 C -0.27 -6.05 5.89 -104.78 -0.62 -6.67 15 14 C -0.02 -0.29 9.50 -39.66 -0.38 -0.67 15 15 C -0.23 -4.09 9.84 -39.70 -0.39 -4.48 15 16 C 0.15 2.77 6.67 -39.20 -0.26 2.50 15 17 O -0.51 -7.70 13.45 -19.07 -0.26 -7.96 15 18 C -0.18 -3.84 10.01 -38.95 -0.39 -4.23 15 19 C 0.24 5.83 6.76 -83.02 -0.56 5.27 15 20 N -0.61 -16.13 10.37 -9.55 -0.10 -16.23 15 21 H 0.29 6.19 8.29 -40.82 -0.34 5.85 15 22 H 0.12 2.00 7.19 -52.49 -0.38 1.62 15 23 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.38 3.79 9.06 45.56 0.41 4.20 15 25 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 248.45 15.07 3.74 3.74 Total: -1.00 -29.08 248.45 -7.21 -36.29 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -0.36 Total: 4.26 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -4.33 Total: -0.75 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.46 Total: -44.88 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.26 Total: -7.96 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.02 Total: 11.93 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.45 Total: -2.63 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.08 -7.21 -36.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838018.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds