Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30654 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99926 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00032 * 3 2 1 7 7 C 1.40122 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99671 * 0.27875 * 7 2 1 10 10 N 1.33905 * 118.42766 * 359.72637 * 9 7 2 11 11 C 1.31506 * 122.14722 * 179.97438 * 10 9 7 12 12 Cl 1.73598 * 120.84676 * 180.02562 * 11 10 9 13 13 C 1.41164 * 118.29767 * 359.97438 * 11 10 9 14 14 C 1.39801 * 122.63053 * 180.02562 * 13 11 10 15 15 C 1.36393 * 119.56733 * 180.02562 * 14 13 11 16 16 C 1.39694 * 121.58852 * 359.95091 * 15 14 13 17 17 O 1.35786 * 119.29250 * 180.02562 * 16 15 14 18 18 C 1.37808 * 121.42188 * 0.05230 * 16 15 14 19 19 C 1.40328 * 119.20056 * 359.97265 * 18 16 15 20 20 N 1.33026 * 118.42582 * 179.45454 * 9 7 2 21 21 H 0.97005 * 120.00017 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.22343 * 359.95109 * 14 13 11 23 23 H 1.07997 * 119.20480 * 179.97438 * 15 14 13 24 24 H 0.96691 * 114.00174 * 270.02539 * 17 16 15 25 25 H 1.08002 * 120.40291 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0943 1.6965 1.2124 7 6 2.0072 -1.2135 0.0005 8 1 3.0872 -1.2134 0.0001 9 6 1.3006 -2.4373 -0.0049 10 7 -0.0379 -2.4006 -0.0048 11 6 -0.7679 -3.4944 -0.0101 12 17 -2.5017 -3.4074 -0.0105 13 6 -0.1056 -4.7410 -0.0167 14 6 -0.7916 -5.9591 -0.0232 15 6 -0.0882 -7.1276 -0.0287 16 6 1.3087 -7.1408 -0.0291 17 8 1.9618 -8.3313 -0.0353 18 6 2.0382 -5.9717 -0.0228 19 6 1.3614 -4.7424 -0.0164 20 7 1.9971 -3.5706 -0.0153 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8714 -5.9748 -0.0226 23 1 -0.6241 -8.0652 -0.0333 24 1 2.1508 -8.6807 0.8462 25 1 3.1179 -6.0011 -0.0236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838018.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -10.302979 kcal Electronic energy + Delta-G solvation = -15210.122017 eV Core-core repulsion = 12406.749207 eV Total energy + Delta-G solvation = -2803.372810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.35364 -39.48656 -37.67579 -36.89919 -35.34179 -34.28365 -31.39730 -30.83682 -28.35662 -24.91762 -24.22417 -22.85704 -20.69061 -19.26392 -18.79015 -17.67785 -17.25552 -16.63922 -15.87894 -15.83435 -15.44669 -14.92546 -14.71056 -13.69965 -13.43547 -13.30977 -13.19636 -13.02842 -12.91907 -12.41382 -12.23412 -12.02740 -11.76034 -11.30097 -11.14128 -11.01943 -9.66141 -9.61185 -9.21339 -8.64909 -6.87726 -0.42312 0.13490 0.82003 1.24196 1.38156 1.45496 1.53620 2.12869 2.13422 2.74955 3.24310 3.67407 3.69558 3.95979 4.06364 4.21040 4.40603 4.65453 4.72890 4.96319 5.21713 5.33486 5.48415 5.53151 5.86259 5.92389 6.18295 6.39097 6.83199 6.92421 7.92767 8.13326 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.007617 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.005074 B = 3674.975392 C = 4706.600174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.020 3.980 3 Si 1.007 2.993 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.255 1.255 7 C -0.393 4.393 8 H 0.103 0.897 9 C 0.365 3.635 10 N -0.503 5.503 11 C 0.254 3.746 12 Cl -0.027 7.027 13 C -0.284 4.284 14 C -0.015 4.015 15 C -0.213 4.213 16 C 0.178 3.822 17 O -0.503 6.503 18 C -0.207 4.207 19 C 0.210 3.790 20 N -0.641 5.641 21 H 0.294 0.706 22 H 0.147 0.853 23 H 0.157 0.843 24 H 0.414 0.586 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -6.035 1.751 6.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.207 4.207 3 Si 0.824 3.176 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.426 4.426 8 H 0.121 0.879 9 C 0.133 3.867 10 N -0.219 5.219 11 C 0.060 3.940 12 Cl 0.001 6.999 13 C -0.293 4.293 14 C -0.035 4.035 15 C -0.233 4.233 16 C 0.130 3.870 17 O -0.317 6.317 18 C -0.228 4.228 19 C 0.072 3.928 20 N -0.366 5.366 21 H 0.105 0.895 22 H 0.165 0.835 23 H 0.174 0.826 24 H 0.275 0.725 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.165 -4.819 1.158 5.409 hybrid contribution -0.348 -0.071 0.455 0.577 sum -2.513 -4.890 1.613 5.730 Atomic orbital electron populations 1.70135 1.09102 1.30981 1.24135 1.27261 0.96029 1.05024 0.92383 0.84885 0.78513 0.73651 0.80514 1.17999 1.18232 1.17858 1.20024 0.95686 0.88460 1.38435 0.87905 1.20162 0.83902 0.92660 0.89941 1.68227 1.08124 1.29318 1.16245 1.22589 0.87754 0.90127 0.93486 1.98311 1.06910 1.98543 1.96163 1.20006 0.94774 0.94148 1.20355 1.20820 1.00155 0.89999 0.92550 1.20979 0.92719 0.99135 1.10447 1.18309 0.90250 0.84183 0.94217 1.84665 1.77905 1.33498 1.35639 1.20877 0.99947 0.89604 1.12378 1.20131 0.88756 0.93290 0.90597 1.69191 1.38090 0.97543 1.31771 0.89473 0.83531 0.82565 0.72539 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.25 11.35 21.85 0.25 -36.01 15 2 C 0.02 0.93 5.50 85.33 0.47 1.40 15 3 Si 1.01 35.23 29.56 68.60 2.03 37.26 15 4 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 5 H -0.26 -8.35 7.11 99.48 0.71 -7.65 15 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 15 7 C -0.39 -21.12 9.34 23.49 0.22 -20.90 15 8 H 0.10 5.29 7.85 -2.91 -0.02 5.26 15 9 C 0.37 20.94 7.34 135.08 0.99 21.93 15 10 N -0.50 -27.76 7.66 -183.79 -1.41 -29.17 15 11 C 0.25 12.31 7.42 85.46 0.63 12.94 15 12 Cl -0.03 -1.06 27.96 -2.72 -0.08 -1.14 15 13 C -0.28 -12.91 5.89 -19.97 -0.12 -13.03 15 14 C -0.01 -0.52 9.50 22.22 0.21 -0.31 15 15 C -0.21 -6.57 9.84 22.19 0.22 -6.35 15 16 C 0.18 5.93 6.67 22.52 0.15 6.08 15 17 O -0.50 -13.09 13.45 -91.15 -1.23 -14.31 15 18 C -0.21 -8.50 10.01 22.68 0.23 -8.27 15 19 C 0.21 10.37 6.76 41.64 0.28 10.65 15 20 N -0.64 -35.68 10.37 -184.13 -1.91 -37.59 15 21 H 0.29 13.00 8.29 -92.70 -0.77 12.23 15 22 H 0.15 4.35 7.19 -2.91 -0.02 4.33 15 23 H 0.16 3.61 8.06 -2.91 -0.02 3.59 15 24 H 0.41 6.12 9.06 -74.06 -0.67 5.45 15 25 H 0.13 5.12 8.06 -2.91 -0.02 5.10 15 Total: -1.00 -66.00 248.45 1.53 -64.47 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.59 Total: 12.35 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 3.29 Total: 4.14 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.07 Total: -102.77 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -1.23 Total: -14.31 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -66.00 1.53 -64.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838018.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.164 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds