Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30470 * 1 3 3 Si 1.86796 * 120.00462 * 2 1 4 4 H 1.48496 * 109.47693 * 240.00089 * 3 2 1 5 5 H 1.48499 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47197 * 119.99755 * 3 2 1 7 7 C 1.40606 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00020 * 194.58562 * 7 2 1 9 9 C 1.39997 * 119.99789 * 14.58388 * 7 2 1 10 10 C 1.40590 * 127.39675 * 212.71266 * 9 7 2 11 11 C 1.46377 * 125.57136 * 0.02562 * 10 9 7 12 12 O 1.21653 * 119.99980 * 6.12217 * 11 10 9 13 13 O 1.34997 * 120.00146 * 186.12325 * 11 10 9 14 14 O 1.34545 * 108.86101 * 179.75445 * 10 9 7 15 15 C 1.34922 * 111.59647 * 0.42071 * 14 10 9 16 16 C 1.40241 * 108.50474 * 359.57983 * 15 14 10 17 17 C 1.39148 * 120.35188 * 180.24471 * 16 15 14 18 18 C 1.37922 * 119.71663 * 359.97438 * 17 16 15 19 19 C 1.38613 * 120.18311 * 0.02925 * 18 17 16 20 20 C 1.38079 * 120.64116 * 359.94597 * 19 18 17 21 21 F 1.35100 * 120.00086 * 180.02562 * 20 19 18 22 22 H 0.97002 * 119.99199 * 354.92958 * 1 2 3 23 23 H 0.96697 * 113.99957 * 180.02562 * 13 11 10 24 24 H 1.08002 * 120.13708 * 180.02562 * 17 16 15 25 25 H 1.07997 * 119.91376 * 180.02562 * 18 17 16 26 26 H 1.07998 * 119.68435 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6176 0.0000 4 1 3.0926 1.6964 -1.2124 5 1 1.2739 2.7464 0.0006 6 1 3.0925 1.6963 1.2125 7 6 2.0077 -1.2177 -0.0005 8 1 3.0615 -1.2329 0.2350 9 6 1.3415 -2.4104 -0.3064 10 6 1.6042 -3.6916 0.2093 11 6 2.6463 -4.0203 1.1833 12 8 3.2996 -3.1324 1.6980 13 8 2.8824 -5.3085 1.5105 14 8 0.7374 -4.5654 -0.3342 15 6 -0.1005 -3.9597 -1.2010 16 6 0.2114 -2.5930 -1.2402 17 6 -0.5113 -1.7301 -2.0584 18 6 -1.5390 -2.2240 -2.8344 19 6 -1.8517 -3.5739 -2.7996 20 6 -1.1416 -4.4403 -1.9923 21 9 -1.4571 -5.7537 -1.9688 22 1 -0.4849 0.8368 0.0743 23 1 3.5880 -5.4261 2.1612 24 1 -0.2679 -0.6782 -2.0862 25 1 -2.1016 -1.5572 -3.4709 26 1 -2.6582 -3.9520 -3.4103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859387.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -123.301024 kcal Electronic energy + Delta-G solvation = -17761.518909 eV Core-core repulsion = 14492.617010 eV Total energy + Delta-G solvation = -3268.901899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.047 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -48.17598 -40.85033 -38.63638 -36.75803 -35.07037 -34.42043 -31.21135 -29.29016 -28.89857 -26.25439 -23.67597 -21.93692 -20.94435 -19.79111 -17.83422 -17.45276 -16.44815 -16.18181 -15.77624 -15.48531 -15.09621 -14.78561 -14.59827 -14.07685 -13.71516 -13.12240 -12.81311 -12.47248 -12.13193 -11.73399 -11.51308 -11.28347 -11.17265 -10.99154 -10.60064 -10.55896 -10.27475 -9.76469 -9.43573 -8.74389 -7.79539 -7.43624 -7.11616 -4.83728 1.47559 2.02652 2.60397 2.86560 2.90281 3.03454 3.61564 3.69610 4.00195 4.33442 4.41367 4.83866 4.93858 5.42948 5.67218 5.88897 5.97970 6.11369 6.61078 6.64256 6.69126 6.76045 7.02186 7.15250 7.27522 7.39784 7.49070 7.93928 8.14064 8.18817 8.46906 9.13377 9.63962 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.011334 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.901658 B = 2469.824546 C = 4001.063235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.071 3.929 3 Si 0.925 3.075 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.382 4.382 8 H 0.109 0.891 9 C 0.130 3.870 10 C -0.253 4.253 11 C 0.551 3.449 12 O -0.536 6.536 13 O -0.521 6.521 14 O -0.189 6.189 15 C 0.062 3.938 16 C -0.109 4.109 17 C -0.017 4.017 18 C -0.164 4.164 19 C -0.120 4.120 20 C 0.059 3.941 21 F -0.148 7.148 22 H 0.295 0.705 23 H 0.391 0.609 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 0.716 -3.783 4.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.153 4.153 3 Si 0.748 3.252 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.408 4.408 8 H 0.127 0.873 9 C 0.125 3.875 10 C -0.298 4.298 11 C 0.406 3.594 12 O -0.432 6.432 13 O -0.330 6.330 14 O -0.094 6.094 15 C 0.011 3.989 16 C -0.111 4.111 17 C -0.036 4.036 18 C -0.183 4.183 19 C -0.139 4.139 20 C 0.039 3.961 21 F -0.127 7.127 22 H 0.107 0.893 23 H 0.245 0.755 24 H 0.150 0.850 25 H 0.143 0.857 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.086 0.798 -3.921 4.512 hybrid contribution 0.531 0.382 0.526 0.839 sum -1.555 1.181 -3.395 3.916 Atomic orbital electron populations 1.69637 1.08156 1.31380 1.28962 1.26336 0.94981 1.02345 0.91663 0.86040 0.80157 0.78058 0.80975 1.18027 1.19703 1.18039 1.19407 0.98137 0.88865 1.34356 0.87311 1.18547 0.88383 0.91468 0.89082 1.19960 1.06004 0.88932 1.14945 1.18604 0.81321 0.79582 0.79941 1.90846 1.50065 1.48157 1.54132 1.85138 1.56911 1.30257 1.60733 1.83720 1.39391 1.36641 1.49631 1.19669 0.93233 0.92548 0.93445 1.19832 0.99958 0.91240 1.00028 1.20747 0.91821 0.99673 0.91324 1.20669 1.00289 0.94125 1.03213 1.20635 1.00195 0.93521 0.99556 1.16469 0.98285 0.78315 1.02997 1.91419 1.92500 1.32874 1.95932 0.89316 0.75465 0.84986 0.85742 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.13 10.08 55.58 0.56 -16.57 15 2 C 0.07 1.60 5.08 -17.24 -0.09 1.51 15 3 Si 0.93 16.83 29.59 -169.99 -5.03 11.80 15 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.38 -9.67 8.44 -38.03 -0.32 -9.99 15 8 H 0.11 2.79 7.04 -52.49 -0.37 2.42 15 9 C 0.13 3.43 5.76 -104.47 -0.60 2.83 15 10 C -0.25 -6.73 7.26 -35.42 -0.26 -6.99 15 11 C 0.55 13.64 8.27 34.00 0.28 13.92 15 12 O -0.54 -13.91 15.99 -19.38 -0.31 -14.22 15 13 O -0.52 -10.72 13.56 -43.00 -0.58 -11.31 15 14 O -0.19 -5.00 10.54 2.79 0.03 -4.97 15 15 C 0.06 1.51 7.33 -38.43 -0.28 1.23 15 16 C -0.11 -2.65 5.78 -104.93 -0.61 -3.26 15 17 C -0.02 -0.36 8.75 -39.36 -0.34 -0.71 15 18 C -0.16 -2.88 10.04 -39.56 -0.40 -3.28 15 19 C -0.12 -2.12 9.99 -39.50 -0.39 -2.51 15 20 C 0.06 1.25 7.32 -39.24 -0.29 0.96 15 21 F -0.15 -3.07 17.27 2.25 0.04 -3.03 15 22 H 0.30 5.91 8.30 -40.82 -0.34 5.57 15 23 H 0.39 5.73 8.98 45.56 0.41 6.14 15 24 H 0.13 2.70 6.35 -52.49 -0.33 2.37 15 25 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15 26 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 249.15 15.07 3.75 3.75 Total: -1.00 -29.35 249.15 -5.11 -34.46 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -0.27 Total: 6.37 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.30 Total: -6.29 kcal Atomic # 7 Polarization: -17.13 SS G_CDS: 0.56 Total: -16.57 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.86 Total: -30.50 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.35 -5.11 -34.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859387.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.844 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds