Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48499 * 109.46849 * 85.01715 * 3 2 1 5 5 H 1.48500 * 109.46746 * 205.01676 * 3 2 1 6 6 H 1.48503 * 109.46818 * 325.01691 * 3 2 1 7 7 C 1.40259 * 119.99935 * 179.72175 * 2 1 3 8 8 H 1.08000 * 120.00684 * 187.15853 * 7 2 1 9 9 C 1.40190 * 120.00062 * 7.16298 * 7 2 1 10 10 N 1.33460 * 128.01312 * 187.05579 * 9 7 2 11 11 C 1.31293 * 113.40250 * 179.97438 * 10 9 7 12 12 C 1.48284 * 120.66639 * 179.97438 * 11 10 9 13 13 C 1.39408 * 120.13736 * 359.71988 * 12 11 10 14 14 C 1.37965 * 119.89328 * 179.72470 * 13 12 11 15 15 C 1.38383 * 120.18581 * 0.57869 * 14 13 12 16 16 C 1.38249 * 120.28411 * 359.70018 * 15 14 13 17 17 C 1.38289 * 120.09577 * 359.97438 * 16 15 14 18 18 F 1.35106 * 120.08894 * 180.02562 * 17 16 15 19 19 N 1.31092 * 118.66541 * 359.97438 * 11 10 9 20 20 S 1.56679 * 108.57334 * 359.72330 * 19 11 10 21 21 H 0.97006 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.04912 * 0.02837 * 13 12 11 23 23 H 1.08000 * 119.90481 * 180.27428 * 14 13 12 24 24 H 1.08002 * 119.85922 * 179.72054 * 15 14 13 25 25 H 1.07999 * 119.95312 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.3827 2.1072 1.3948 5 1 3.5868 1.4119 -0.5921 6 1 1.4946 2.6200 -0.8027 7 6 2.0078 -1.2147 0.0059 8 1 3.0815 -1.2179 0.1225 9 6 1.3150 -2.4247 -0.1396 10 7 1.7952 -3.6651 -0.0291 11 6 0.8881 -4.5945 -0.2221 12 6 1.2470 -6.0307 -0.1377 13 6 2.5591 -6.4089 0.1432 14 6 2.8863 -7.7467 0.2262 15 6 1.9184 -8.7138 0.0197 16 6 0.6161 -8.3473 -0.2650 17 6 0.2738 -7.0098 -0.3444 18 9 -0.9990 -6.6517 -0.6222 19 7 -0.3413 -4.2272 -0.4910 20 16 -0.4028 -2.6616 -0.5041 21 1 -0.4850 0.8401 -0.0004 22 1 3.3172 -5.6559 0.3004 23 1 3.9018 -8.0398 0.4482 24 1 2.1813 -9.7595 0.0815 25 1 -0.1351 -9.1066 -0.4249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = -11.078858 kcal Electronic energy + Delta-G solvation = -14991.528360 eV Core-core repulsion = 12202.538402 eV Total energy + Delta-G solvation = -2788.989959 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.69655 -40.67334 -39.18539 -36.28166 -33.04505 -32.09287 -31.20093 -29.46637 -25.68787 -23.83013 -22.89683 -20.98579 -19.74025 -18.71844 -18.30782 -17.06256 -16.88617 -16.72139 -16.58213 -15.53129 -15.40002 -15.02537 -14.52992 -13.97535 -13.73413 -13.54021 -13.28273 -13.02798 -12.83998 -12.10205 -12.05611 -11.84698 -11.64269 -11.16700 -10.87096 -10.38941 -10.14271 -9.73501 -9.10975 -8.97803 -7.02349 -0.12061 0.28798 0.64455 1.32059 1.40207 1.53763 1.62426 1.93035 2.12277 2.14486 2.74618 3.06946 3.36822 3.54122 3.89691 4.15888 4.36052 4.43702 4.73644 4.81748 5.08003 5.16379 5.29373 5.38354 5.49297 5.54688 5.81490 5.99431 6.17679 6.24414 7.45490 7.89368 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.044252 B = 0.006189 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.585802 B = 4523.231182 C = 5137.596748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.021 3.979 3 Si 1.027 2.973 4 H -0.253 1.253 5 H -0.248 1.248 6 H -0.256 1.256 7 C -0.356 4.356 8 H 0.118 0.882 9 C 0.134 3.866 10 N -0.619 5.619 11 C 0.274 3.726 12 C -0.077 4.077 13 C -0.068 4.068 14 C -0.125 4.125 15 C -0.071 4.071 16 C -0.158 4.158 17 C 0.091 3.909 18 F -0.143 7.143 19 N -0.677 5.677 20 S 0.202 5.798 21 H 0.317 0.683 22 H 0.130 0.870 23 H 0.171 0.829 24 H 0.183 0.817 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -6.309 0.680 8.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.204 4.204 3 Si 0.843 3.157 4 H -0.177 1.177 5 H -0.171 1.171 6 H -0.180 1.180 7 C -0.403 4.403 8 H 0.136 0.864 9 C -0.119 4.119 10 N -0.354 5.354 11 C -0.012 4.012 12 C -0.083 4.083 13 C -0.089 4.089 14 C -0.142 4.142 15 C -0.089 4.089 16 C -0.177 4.177 17 C 0.070 3.930 18 F -0.122 7.122 19 N -0.519 5.519 20 S 0.352 5.648 21 H 0.131 0.869 22 H 0.148 0.852 23 H 0.189 0.811 24 H 0.200 0.800 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.108 -6.293 0.385 7.525 hybrid contribution 0.284 0.634 0.081 0.699 sum 4.392 -5.659 0.466 7.178 Atomic orbital electron populations 1.69187 1.09660 1.33810 1.27858 1.27487 0.96010 1.05997 0.90860 0.84505 0.78736 0.72251 0.80251 1.17665 1.17119 1.18020 1.19507 0.97043 0.87412 1.36307 0.86415 1.26385 0.95015 0.94691 0.95775 1.69164 1.31283 0.98370 1.36606 1.21707 0.85056 0.96041 0.98424 1.18535 0.95651 0.87613 1.06497 1.21321 0.93227 0.98277 0.96119 1.21571 1.02042 0.90533 1.00097 1.21598 0.90356 1.01933 0.95053 1.21417 1.00122 0.91999 1.04146 1.18289 0.78677 0.94103 1.01980 1.91483 1.36751 1.93072 1.90851 1.73431 1.24248 1.15025 1.39180 1.82307 1.16456 0.96863 1.69196 0.86945 0.85241 0.81132 0.79970 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.21 11.09 21.88 0.24 -35.97 15 2 C 0.02 0.91 5.49 85.36 0.47 1.38 15 3 Si 1.03 31.78 29.57 68.60 2.03 33.81 15 4 H -0.25 -7.44 7.11 99.48 0.71 -6.73 15 5 H -0.25 -7.45 7.11 99.48 0.71 -6.74 15 6 H -0.26 -7.42 7.11 99.48 0.71 -6.71 15 7 C -0.36 -17.98 9.46 23.24 0.22 -17.76 15 8 H 0.12 5.53 7.86 -2.91 -0.02 5.50 15 9 C 0.13 7.64 7.41 84.92 0.63 8.27 15 10 N -0.62 -35.40 10.09 -221.27 -2.23 -37.63 15 11 C 0.27 15.47 7.35 138.37 1.02 16.49 15 12 C -0.08 -3.58 5.88 -20.00 -0.12 -3.69 15 13 C -0.07 -2.53 9.59 22.49 0.22 -2.31 15 14 C -0.12 -3.11 10.03 22.24 0.22 -2.88 15 15 C -0.07 -1.53 10.04 22.31 0.22 -1.31 15 16 C -0.16 -4.53 10.02 22.28 0.22 -4.31 15 17 C 0.09 3.80 7.28 22.61 0.16 3.97 15 18 F -0.14 -6.83 15.40 44.97 0.69 -6.13 15 19 N -0.68 -40.10 9.54 -83.57 -0.80 -40.90 15 20 S 0.20 11.55 21.01 -56.49 -1.19 10.36 15 21 H 0.32 12.71 8.29 -92.70 -0.77 11.95 15 22 H 0.13 4.99 7.59 -2.91 -0.02 4.97 15 23 H 0.17 2.78 8.06 -2.91 -0.02 2.75 15 24 H 0.18 2.07 8.06 -2.91 -0.02 2.04 15 25 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 Total: -1.00 -71.30 248.48 3.25 -68.05 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.24 Total: 10.57 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 3.27 Total: -2.16 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -2.79 Total: -114.50 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.69 Total: -6.13 kcal Atomic # 14 Polarization: 31.78 SS G_CDS: 2.03 Total: 33.81 kcal Atomic # 16 Polarization: 11.55 SS G_CDS: -1.19 Total: 10.36 kcal Total: -71.30 3.25 -68.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.971 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds